YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21466057
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTSTLKGQ CIAEFLGTGL LIFFGVGCVA ALKVAGASFG QWEISVIFGL GVAMAIYLTA  60
   61 GVSGAHLNPA VTIALWLFAC FDKRKVIPFI VSQVAGAFCA AALVYGLYYN LFFDFEQTHH 120
  121 IVRGSVESVD LAGTFSTYPN PHINFVQAFA VEMVITAILM GLILALTDDG NGVPRGPLAP 180
  181 LLIGLLIAVI GASMGPLTGT AMNPARDFGP KVFAWLAGWG NVAFTGGRDI PYFLVPLFGP 240
  241 IVGAIVGAFA YRKLIGRHLP CDICVVEEKE TTTPSEQKAS L

Type	Start	End	Confidence
Cytoplasmic	1	14	0.87
Transmembrane Helix	15	37	0.89
Non-Cytoplasmic	38	46	0.83
Transmembrane Helix	47	78	0.74
Cytoplasmic	79	85	0.91
Transmembrane Helix	86	109	0.89
Non-Cytoplasmic	110	144	0.96
Transmembrane Helix	145	166	0.93
Cytoplasmic	167	177	0.83
Transmembrane Helix	178	199	0.90
Non-Cytoplasmic	200	229	0.92
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	281	0.96