YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12246834
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQSLIDTV SLQKLLLLGA LLRLILIAYA FFHDQWFRVK YTDIDYMIVV DGARHMWNGG  60
   61 SPFDRTTFRY TPLLAALVMP SIWIANPMGK LIFASSDLGA AWYCYGVLKS FAKERSAKWM 120
  121 VSLFILFNPI VLSVSTRGNS DMLVTFMSLM VLSKFARRKC YQAAAVLGFA VHFKIYPIIY 180
  181 ALPLTLGVWE QSVAASTNTW RRVVKTAVVV SICALMAAIS FAVPTVLCYM KYGQQYLNEA 240
  241 FIYHVYREDH RHNFSPYWLL MYLNMARRHL GQGVDFSPRL VAFVPQAVVL SFVSYKLRRN 300
  301 TAHACCVQTV LFVAFNKVCT VQYFVWFIPF LAFLFCEPKE VEDDESGGSG AFKFFSWVKA 360
  361 LGVVLMWAAT IPLWVTTAVP LEFHGYSDFA KLWIVSCLFF LAMVVLASML ARIAYRVQCT 420
  421 KCSAKSIKVA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	32	0.88
Non-Cytoplasmic	33	65	0.84
Transmembrane Helix	66	86	0.67
Cytoplasmic	87	118	0.61
Transmembrane Helix	119	138	0.83
Non-Cytoplasmic	139	169	0.63
Transmembrane Helix	170	193	0.67
Cytoplasmic	194	205	0.56
Transmembrane Helix	206	228	0.89
Non-Cytoplasmic	229	275	0.65
Transmembrane Helix	276	295	0.43
Cytoplasmic	296	354	0.63
Transmembrane Helix	355	378	0.84
Non-Cytoplasmic	379	391	0.68
Transmembrane Helix	392	413	0.92
Cytoplasmic	414	430	0.80