YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26327789
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPPPPPK PWESRRIPGA GPGPGSGPGP TYQSADLGPT LLTRPGQPTL TRVPPPILPR  60
   61 PSQQTGSNNV NTFRPAYSSF SSGYGAYGNS FYGSYSPYSY GYNGLGFNRL RVDDLPPSRF 120
  121 VQQAEESSRG AFQSIESIVH AFASVSMMMD ATFSAVYNSF RAVLDVANHF SRLKIHFTKV 180
  181 FSAFALVRTI RYLYRRLQWK MGLRRGSENE DLWAESEGTV ACLSAEDQAT NSAKSWPIFL 240
  241 FFAVILGGPY LIWKLLSTHN DEVTDNTNWA SGEDDHVVAR AEYDFVAVSD EEISFRAGDM 300
  301 LNLALKEQQP KVRGWLLASL DGQTTGLIPA NYVKILGKRR GRKTIESSTM LKQQQSFTNP 360
  361 TLIKGVTTTN PLDEQEAAFE SVFVETNKVS SAPDSTGKNG DKQDL

Type	Start	End	Confidence
Cytoplasmic	1	137	0.71
Transmembrane Helix	138	157	0.62
Non-Cytoplasmic	158	174	0.78
Transmembrane Helix	175	194	0.63
Cytoplasmic	195	234	0.72
Transmembrane Helix	235	253	0.74
Non-Cytoplasmic	254	405	0.78