YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14270087
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIGDQVCFQ SPGTEKSKKD CVTESTAVPE SEGEATCVTD VPGETAGKST VSNASETEQL  60
   61 LAPFAPDGTP QDFQWTTQPI PHSYRRRTIL EKHPEVEELF GYDVREAITG TLSIFLNFFI 120
  121 GYKIVEWQFG WPAVLLCMAV FSATINHSLF LVMHEASHML LLPERWMNEV FAIFCNLSMG 180
  181 TPAGIGFMRY HLDHHTYTGV DVVDPDIPSE IEGRLFKSRL GKFIFVLLLP FTYTLRPMLR 240
  241 TPKEPIFMEV VNWVVVILWD ILVYQHLGAK GLVYFVGGSF FSLSFHPLNG HLISEHYQFP 300
  301 KGEKLQETYS AYGWENLLTY NCGYHLEHHD FPRIPGSRLP ELHRIAKEFY DLPHHTSWMR 360
  361 VVWDFIMTKE VGPFSRVKRV ATRGGKIPFP HKQFVADELN ELGPFWTGPK TEFQKTAADT 420
  421 KKAQ

Type	Start	End	Confidence
Cytoplasmic	1	106	0.89
Transmembrane Helix	107	122	0.70
Non-Cytoplasmic	123	128	0.56
Transmembrane Helix	129	151	0.90
Cytoplasmic	152	169	0.68
Transmembrane Helix	170	190	0.87
Non-Cytoplasmic	191	218	0.69
Transmembrane Helix	219	235	0.77
Cytoplasmic	236	245	0.57
Transmembrane Helix	246	264	0.72
Non-Cytoplasmic	265	270	0.48
Transmembrane Helix	271	292	0.74
Cytoplasmic	293	424	0.69