YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSPG5_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAGGGGPD WGPPPVLLLL GVTLVLTAGA VPARETGSAI EAEELVRSSL AWESRANDTR  60
   61 EEAGLPAAGE DETSWTERGS EMAAVGPGVG PEEALEASAA VTGTAWLEAD GPGLGGVTAE 120
  121 AGSGDAQTLP ATLQAPDEAL GSSTMPPAIP EATETSGPPS PAVHDKPSVG PELPKEIPLE 180
  181 VRLNLGGSTP EPTFPLQGTL ETQPASDIID IDYFEGLDSE GRGADMGSFP GSPGTSENHP 240
  241 DTEGETPSWS LLDLYDDFTP FDESDFYPTT SFYDDLEEEE EEEEDKDTVG GGDLEDENDL 300
  301 LLPSQKPGVG PGTGQPNNRW HAVPPQHTLG MVPGSSISLR PRPGDPGKDL ASGENGTECR 360
  361 VGFVRHNGSC RSVCDLFPSY CHNGGQCYLV ENIGAFCRCN TQDYIWHKGM RCESIITDFQ 420
  421 VMCVAVGSAA LVLLLLFMMT VFFAKKLYLL KTENTKLRRT NKFRTPSELH NDNFSLSTIA 480
  481 EGSHPNVRKF CDTPRVSSPH ARALAHYDNI VCQDDPSAPH KIQDPLKSRL KEEESFNIQN 540
  541 SMSPKLEGGK GDQDDLGVNC LQNNLT

Type	Start	End	Confidence
Signal Peptide	1	32	0.91
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	420	0.98
Transmembrane Helix	421	443	0.87
Cytoplasmic	444	566	0.94