YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12619300
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPYSRIYHQ YKSSRETGVL FEDDAQTVDG DLTTDRFQLK RAEKRRLPLV WRNIILFALV  60
   61 HLAALYGLHS IFTRAKLATT LFAAGLYIIG MLGVTAGAHR LWAHRTYKAK WPLRLLLVIF 120
  121 NTIAFQDAVY HWARDHRVHH KYSETDADPH NATRGFFFSH VGWLLCKKHP DIKEKGRGLD 180
  181 LSDLRADPIL MFQRKHYYIL MPLACFVLPT VIPMVYWNET LASSWFVATM FRWCFQLNMT 240
  241 WLVNSAAHKF GNRPYDKTMN PTQNAFVSAF TFGEGWHNYH HAFPWDYKTA EWGCYSLNIT 300
  301 TAFIDLFAKI GWAYDLKTVA PDVIQRRVLR TGDGSHELWG WGDKDLTAED ARNVLLVDKS 360
  361 R

Type	Start	End	Confidence
Cytoplasmic	1	48	0.99
Transmembrane Helix	49	70	0.92
Non-Cytoplasmic	71	79	0.76
Transmembrane Helix	80	102	0.90
Cytoplasmic	103	196	0.76
Transmembrane Helix	197	217	0.92
Non-Cytoplasmic	218	224	0.68
Transmembrane Helix	225	243	0.65
Cytoplasmic	244	361	0.74