YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29650725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRL GANKFSERQP IGTAAQGTDD KDYKEPPPAP LFEPGELKSW SFYRAGIAEF  60
   61 VATFLFLYIS ILTVMGVSKS TSKCATVGIQ GIAWSFGGMI FALVYCTAGI SGGHINPAVT 120
  121 FGLFLARKLS LTRAVFYIIM QCLGAICGAG VVKGFQQGLY MGNGGGANVV APGYTKGDGL 180
  181 GAEIVGTFIL VYTVFSATDA KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR 240
  241 SLGAAVIYNQ HHAWADHWIF WVGPFIGAAL AAIYHQVIIR AIPFKSRS

Type	Start	End	Confidence
Cytoplasmic	1	54	0.92
Transmembrane Helix	55	75	0.87
Non-Cytoplasmic	76	91	0.84
Transmembrane Helix	92	115	0.81
Cytoplasmic	116	133	0.71
Transmembrane Helix	134	155	0.92
Non-Cytoplasmic	156	178	0.89
Transmembrane Helix	179	198	0.91
Cytoplasmic	199	208	0.89
Transmembrane Helix	209	229	0.89
Non-Cytoplasmic	230	256	0.88
Transmembrane Helix	257	278	0.93
Cytoplasmic	279	288	0.92