YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI10_TRYBB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.86
Transmembrane Helix	52	70	0.93
Non-Cytoplasmic	71	86	0.70
Transmembrane Helix	87	107	0.84
Cytoplasmic	108	148	0.91
Transmembrane Helix	149	168	0.76
Non-Cytoplasmic	169	191	0.79
Transmembrane Helix	192	215	0.86
Cytoplasmic	216	230	0.87
Transmembrane Helix	231	252	0.91
Non-Cytoplasmic	253	286	0.84
Transmembrane Helix	287	312	0.86
Cytoplasmic	313	318	0.91
Transmembrane Helix	319	341	0.87
Non-Cytoplasmic	342	347	0.80
Transmembrane Helix	348	367	0.95
Cytoplasmic	368	376	0.80
Transmembrane Helix	377	396	0.86
Non-Cytoplasmic	397	558	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWWLISLTF IYRLFLCATI RTVEAPDEWW QSTEVAYNMV FGKGHLPWEW RYGLRSVLFP  60
   61 AVVALPFYLL KLLGRDTTWA VWFAPRVLQA LVLTLIDVSV FCMGATLDEL LAKRELELAE 120
  121 ETRQSKTKGF SYFCEVSVSR SRRGICNSIS YTALLLSLSN WYMAYCGVRL YGNVIEALLV 180
  181 LLTLQQRRYV PFLLLTGLAS AIRVTSAVVL SPLVFRHLAN ATREHGFIRG LFRIVLTGLI 240
  241 VLVAVLGGVM VLDYCFYGRW VLTPLAFFRF NVLHNLSRFF GEHPWYFYVG PVLVGIVGPH 300
  301 VLFTIAAPLV LWRDTASRAV SRPVLGMLGI GAWTLGFYSL IDHKEMRFVF VVIPLSLITA 360
  361 AFVLVRWSRT SAVVVKMNRL FVLFNIVMIY LMGYVYRRGP LDVMAEVRDG PRINRLDVIA 420
  421 TCYTVPGYSY MHKKVNHLGF VDCSIDLDEK TGLPKVTEDI MFRRYPKEYV LWRYDGKHSF 480
  481 NMSDLEESRK ASELQSVVMP KSAPHPDAMV MTRAVAKEIE EPFLKRHGYR LYRTFLHSPL 540
  541 TLAPYEDIYI QMWVKVTK