YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48146633
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPWDELAL AFSRTSMFPF FDIAHYLVSV MEVKRQPGAA ALAWKNPISS WFTAMLHCFG  60
   61 GGILSCLLLA EPPLKFLANH TNILLASSIW YITFFCPHDL VSQGYSYLPV QLLASGMKEV 120
  121 TRTWKIVGGV THANSYYKNG WIVMIAIGWA RGAGGTIITN FERLVKGDWK PEGDEWLKMS 180
  181 YPAKVTLLGS VIFTFQHTQH LAISKHNLMF LYTIFIVATK ITMMTTQTST MTFAPFEDTL 240
  241 SWMLFGWQQP FSSCEKKSEA KSPSNGVGSL ASKPVDVASD NVKKKHTKKN D

Type	Start	End	Confidence
Cytoplasmic	1	9	0.64
Transmembrane Helix	10	29	0.62
Non-Cytoplasmic	30	47	0.78
Transmembrane Helix	48	70	0.89
Cytoplasmic	71	77	0.71
Transmembrane Helix	78	101	0.72
Non-Cytoplasmic	102	139	0.85
Transmembrane Helix	140	161	0.82
Cytoplasmic	162	180	0.83
Transmembrane Helix	181	200	0.56
Non-Cytoplasmic	201	207	0.46
Transmembrane Helix	208	224	0.75
Cytoplasmic	225	291	0.63