YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157874498, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNESILESY SGVTPERKKS RMPAKLDWWQ SATGLFLGLF MIGHMFFVST ILLGDNVMLW  60
   61 VTKKFQLDFI FEGGKPIVVS FLAAFVFAVF IAHAFLAMRK FPINYRQYLT FKTHKDLMRH 120
  121 GDTTLWWIQA MTGFAMFFLG SVHLYIMMTQ PQTIGPVSSS FRMVSEWMWP LYLVLLFAVE 180
  181 LHGSVGLYRL AVKWGWFDGE TPDKTRANLK KLKTLMSAFL IVLGLLTFGA YVKKGLEQTD 240
  241 PNIDYKYFDY KRTHHR

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	51	0.89
Non-Cytoplasmic	52	76	0.92
Transmembrane Helix	77	97	0.94
Cytoplasmic	98	124	0.94
Transmembrane Helix	125	147	0.94
Non-Cytoplasmic	148	167	0.97
Transmembrane Helix	168	191	0.90
Cytoplasmic	192	211	0.95
Transmembrane Helix	212	232	0.92
Non-Cytoplasmic	233	256	0.97