YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12850853, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGKLSVAN KAPGTEGQQH QANGEKKDAP AVPSAPPSYE EATSGEGLKA GTFPQGPTAV  60
   61 PLHPSWAYVD PRHHEHFTTF SWDDQKVRRL FIRKVYTILL VQLLVTLAVV ALFTFCDVVK 120
  121 DYVQANPGWY WASYAVFFAT YLTLACCSGP RRHFPWNLIL LTIFTLSMAY LTGMLSSYYN 180
  181 TTSVLLCLVI TALVCLSVTI FSFQTKFDFT SCQGVLFVLL MTLFFSGLLL AVLLPFQYVP 240
  241 WLHAVYAVLG AGVFTLFLAF DTQLLMGNRR HSLSPEEYIF GALNIYLDII YIFTFFLQLF 300
  301 GTNRE

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	116	0.93
Non-Cytoplasmic	117	127	0.87
Transmembrane Helix	128	147	0.92
Cytoplasmic	148	153	0.84
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	181	0.75
Transmembrane Helix	182	203	0.94
Cytoplasmic	204	213	0.82
Transmembrane Helix	214	234	0.95
Non-Cytoplasmic	235	241	0.76
Transmembrane Helix	242	262	0.91
Cytoplasmic	263	277	0.88
Transmembrane Helix	278	300	0.86
Non-Cytoplasmic	301	305	0.84