YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2864681
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGYDDKRYF TSTAVLLNEL IKLVVCFSVG YHQFRKNVGK EAKLRAFLPQ IFGGDSWKLA  60
   61 IPAFLYTCQN NLQYVAAGNL TAASFQVTYQ LKILTTAIFS ILLLHRRLGP MKWFSLFLLT 120
  121 GGIAIVQLQN LNSDDQMSAG PMNPVTGFSA VLVACLISGL AGVYFEKVLK DTNPSLWVRN 180
  181 VQLSFFSLFP CLFTILMKDY HNIAENGFFF GYNSIVWLAI LLQAGGGIIV ALCVAFADNI 240
  241 MKNFSTSISI IISSLASVYL MDFKISLTFL IGVMLVIAAT FLYTKPESKP SPSRGTYIPM 300
  301 TTQDAAAKDV DHKH

Type	Start	End	Confidence
Cytoplasmic	1	110	0.71
Transmembrane Helix	111	131	0.87
Non-Cytoplasmic	132	144	0.92
Transmembrane Helix	145	165	0.94
Cytoplasmic	166	175	0.91
Transmembrane Helix	176	197	0.91
Non-Cytoplasmic	198	214	0.89
Transmembrane Helix	215	236	0.93
Cytoplasmic	237	242	0.76
Transmembrane Helix	243	261	0.75
Non-Cytoplasmic	262	264	0.70
Transmembrane Helix	265	284	0.92
Cytoplasmic	285	314	0.77