YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3608171
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.65
Transmembrane Helix	13	33	0.93
Cytoplasmic	34	96	0.71
Transmembrane Helix	97	116	0.93
Non-Cytoplasmic	117	140	0.67
Transmembrane Helix	141	168	0.75
Cytoplasmic	169	187	0.68
Transmembrane Helix	188	211	0.86
Non-Cytoplasmic	212	227	0.57
Transmembrane Helix	228	248	0.75
Cytoplasmic	249	296	0.67
Transmembrane Helix	297	318	0.61
Non-Cytoplasmic	319	325	0.56
Transmembrane Helix	326	348	0.91
Cytoplasmic	349	366	0.57
Transmembrane Helix	367	387	0.89
Non-Cytoplasmic	388	403	0.54
Transmembrane Helix	404	424	0.91
Cytoplasmic	425	449	0.52
Transmembrane Helix	450	476	0.69
Non-Cytoplasmic	477	477	0.23
Transmembrane Helix	478	501	0.72
Cytoplasmic	502	539	0.50
Transmembrane Helix	540	563	0.84
Non-Cytoplasmic	564	571	0.45
Transmembrane Helix	572	593	0.87
Cytoplasmic	594	648	0.55
Transmembrane Helix	649	667	0.78
Non-Cytoplasmic	668	668	0.21
Transmembrane Helix	669	683	0.54
Cytoplasmic	684	740	0.55
Transmembrane Helix	741	764	0.74
Non-Cytoplasmic	765	768	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTILPDLG TEIFIPVCAV IGIVFSLVQW YYVSQVKLSP GRDAAHNNSA GSKNGYSDYL  60
   61 IEEEEGVNDH NVVIKCAEIQ SAISEGATSF LFTEYKYVGI FMVLFAVLIF VFLGSVESFS 120
  121 TKPQPCTYDK TRTCKPALAT AIFSTVSFLL GAVTSVVSGF LGMKIATYAN ARTTLEARKG 180
  181 VGKAFITAFR SGAVMGFLLA ANGLLVLFIA INLFKLYYGD DWGGLFESIT GYGLGGSSMA 240
  241 LFGRVGGGIY TKAADVGADL VGKVERNIPE DDPRNPAVIA DNVGDNVGDI AGMGSDLFGS 300
  301 YAESSCAALV VASISPFGNN HELTPMLYPL IVSSMGILVC LITTLFATDF FEIKAVKEIE 360
  361 PALKKQLIIS TVLMTFGIAI VTWLSVPSSF TIFNFGTQKV VTNWKLFLCV AVGLWAGLII 420
  421 GFVTEYYTSN AYSPVQDVAD SCRTGAATNV IFGLALGYKS VIIPIFAIAV SIFVSFTFAA 480
  481 MYGIAVAALG MLSTIATGLA IDAYGPISDN AGGIAEMAGM SHRIRERTDA LDAAGNTTAA 540
  541 IGKGFAIGSA ALVSLALFGA FVSRAGVTAV DVLTPKVFIG LIVGAMLPYW FSAMTMKSVG 600
  601 SAALKMVEEV RRQFNTIPGL MEGTAKPDYA TCVKISTDAS IKEMIPPGAL VMLTPLIVGI 660
  661 LFGVETLSGV LAGSLVSGVQ IAISASNTGG AWDNAKKYIE AGASKHARTL GPKGSDPHKA 720
  721 AVIGDTIGDP LKDTSGPSLN ILIKLMAVES LVFAPFFASH GGLLFKIF