YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18249649
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	489	0.66
Transmembrane Helix	490	512	0.89
Non-Cytoplasmic	513	524	0.59
Transmembrane Helix	525	548	0.85
Cytoplasmic	549	600	0.52
Transmembrane Helix	601	625	0.86
Non-Cytoplasmic	626	633	0.49
Transmembrane Helix	634	655	0.91
Cytoplasmic	656	741	0.60
Transmembrane Helix	742	763	0.86
Non-Cytoplasmic	764	1165	0.63
Transmembrane Helix	1166	1187	0.87
Cytoplasmic	1188	1198	0.49
Transmembrane Helix	1199	1217	0.89
Non-Cytoplasmic	1218	1246	0.61
Transmembrane Helix	1247	1269	0.85
Cytoplasmic	1270	1284	0.61
Transmembrane Helix	1285	1307	0.91
Non-Cytoplasmic	1308	1315	0.53
Transmembrane Helix	1316	1336	0.91
Cytoplasmic	1337	1343	0.58
Transmembrane Helix	1344	1364	0.56
Non-Cytoplasmic	1365	1447	0.85
Transmembrane Helix	1448	1469	0.94
Cytoplasmic	1470	1483	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARRHDPTA SVNTEDTANE KSEVGDEKYT DAEVTRLAQQ LTRQSTRFSV SPQNAENPFI  60
   61 ETHEDSTLNP HSGNFKAKNW MKNLLAIQSR DPERYPKRQA GLAFKNLSVH GFGSPTDYQK 120
  121 DVANSVLEIG AFFRTMAGTG KQKIQILRDF DGLVKNGEML IVLGRPGSGC STFLKTIAGE 180
  181 MNGIFKDANS HMNYQGISDK EMRNQFRGEA IYTAETDVHF PQLSVGNTLK FAALARAPRN 240
  241 RLPGVSRDQY AEHMRDVVMA MLGLSHTINT RVGNDFIRGV SGGERKRVSI AEATLCGSPL 300
  301 QCWDNSTRGL DSANALEFCK TLNLMSKYSG TTCAVAIYQA SQSAYDVFDK VTVLYEGRQI 360
  361 YFGRTTEARE FFTNMGFHCP DRQTTADFLT SLTSPAERVV KPGFEKMVPR TPDEFAKGWK 420
  421 NSAAYKELQK EIDDYNTQYP IGGESFQQFV ESRKAMQSKG QRAKSPYTLS VAEQVQICVT 480
  481 RGFQRLKSDY SLTISALIGN TIMALIVGSV FYQLPDDVTS FYSRGALLFF AVLLNSFSSA 540
  541 LEILTLYAQR PIVEKQARYA MYHPFAEAIS SMLCDMPYKI LNAITFNVTL YFMTGLRQNA 600
  601 GAFFTFMLFS FVTTLTMSMI FRTIASYSRT LSQALVPAAI LILGLVIYTG FTIPTRNMLG 660
  661 WSRWMNYIDP IAYGFETLIV NEFHGRNFPC NPESFIPAGD SYADVGRFNK ICSAKGAVAG 720
  721 QNFVSGEAYY TASFQYSNSH RWRNMGIMIG FMVFFMVTYL VGTEYISEAK SKGEVLLFRR 780
  781 GYAPKNSGNS DGDVEQTHGV SSAEKKDGAG SGGEQESAAI QRQTSIFQWQ DVCYDVHIKN 840
  841 EERRILDHVD GWVKPGTCTA LMGVSGAGKT TLLDVLATRV TMGVVSGEML VDGRPRDQSF 900
  901 QRKTGYVQQQ DLHLHTTTVR EALRFSAILR QPRHVSHQEK LDYVEEVIKL LGMEHYADAV 960
  961 VGVPGEGLNV EQRKRLTIGV ELAAKPQLLL FLDEPTSGLD SQTSWSILDL IDTLTKHGQA1020
 1021 ILCTIHQPSA MLFQRFDRLL FLAKGGRTVY FGEIGEHSST LSNYFERNGA PKLSPEANPA1080
 1081 EWMLEVIGAA PGTHSDIDWP AVWRESPERK AVQNHLAELR NNLSLKPVAT TDNDPAGFNE1140
 1141 FAAPFAVQLW QCLIRVFSQY WRTPIYIYSK TALCSLTALY VGFSFFHAQN SMQGLQNQMF1200
 1201 SIFMLMTIFG NLVQQIMPHF VTQRSLYEVR ERPSKTYSWQ AFMSANILVE LPWNALMSVL1260
 1261 IFLCWYYPVG LQRNASADDL HERGALMWLL ILTFMLFTST FSHMMIAGIE LAETGGNLAN1320
 1321 LLFSLCLIFC GVLATPDKMP HFWIFMYRVS PFTYLVSAML STGTSGAKVE CESVELLHFE1380
 1381 PTAGKTCFEY MNTYMNGLVV NGTQVAAPAG GYLVDNNATS NCAFCTIADT DTYLASVLSY1440
 1441 YKDAWRNFGI MWAFIIFNIF GAVCIYWLAR VPKGTRSKKT KTA