YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16797803
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.92
Transmembrane Helix	59	80	0.76
Non-Cytoplasmic	81	96	0.56
Transmembrane Helix	97	115	0.77
Cytoplasmic	116	127	0.82
Transmembrane Helix	128	150	0.90
Non-Cytoplasmic	151	170	0.88
Transmembrane Helix	171	189	0.92
Cytoplasmic	190	200	0.74
Transmembrane Helix	201	223	0.89
Non-Cytoplasmic	224	229	0.76
Transmembrane Helix	230	251	0.90
Cytoplasmic	252	270	0.94
Transmembrane Helix	271	291	0.94
Non-Cytoplasmic	292	308	0.91
Transmembrane Helix	309	332	0.88
Cytoplasmic	333	351	0.90
Transmembrane Helix	352	373	0.92
Non-Cytoplasmic	374	394	0.87
Transmembrane Helix	395	415	0.89
Cytoplasmic	416	424	0.72
Transmembrane Helix	425	447	0.88
Non-Cytoplasmic	448	453	0.77
Transmembrane Helix	454	476	0.92
Cytoplasmic	477	513	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHSLKQPL LDKEDQPPVL PPSSYNGSES QGLAEEPKGE FKTWLVEELT HQFWLAGPMI  60
   61 LVNLLQYLLN VVSVMFVGHL GELALASSSI ATSLAGVTGY HVMMGLASAL ETLCGQAFGA 120
  121 KEYRLSGIFL QRAIFVLTLC AFPISFVWWH MGTILKFIGQ DPSISDGAME YARFLIPSLF 180
  181 AYAFLQPLVK FLQTQSAVNS MAVFSGITLL FHAPLCYMLV FYFGIGFRGA AIANSISQWI 240
  241 NVIFLALYVR FSPTCKRTWT GFSREALHDI FYFLKLAVPS TVMVCLEYWC FESIVLLSGL 300
  301 LPNPKLETSA LAICLNTIAL MYMVPFGLSA AVSTRVSNEL GAGRPYAAKA AVKLTVSLAL 360
  361 LEGCLMSILL ISVRGVWPYL YSGDAEVVNY VSKMVPFLAT LAILDGFQGT LCGVARGCGW 420
  421 QHLGAYTNLG AFYVIGIPTA LLMAFHFHLN GYGLWIGIIC GLVTQAFLLA VITLTLNWQK 480
  481 LADEATDRVH HSYVEGDVLP KHGQKVDHSQ LTQ