YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14587811, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.87
Transmembrane Helix	47	81	0.59
Non-Cytoplasmic	82	97	0.47
Transmembrane Helix	98	120	0.75
Cytoplasmic	121	131	0.51
Transmembrane Helix	132	154	0.91
Non-Cytoplasmic	155	165	0.54
Transmembrane Helix	166	190	0.84
Cytoplasmic	191	200	0.56
Transmembrane Helix	201	222	0.88
Non-Cytoplasmic	223	256	0.57
Transmembrane Helix	257	277	0.80
Cytoplasmic	278	285	0.46
Transmembrane Helix	286	310	0.79
Non-Cytoplasmic	311	322	0.47
Transmembrane Helix	323	347	0.87
Cytoplasmic	348	355	0.43
Transmembrane Helix	356	375	0.93
Non-Cytoplasmic	376	381	0.42
Transmembrane Helix	382	403	0.90
Cytoplasmic	404	410	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGFKVNSPQ VPNGVSRPTV SSSWNSRGTV ERALKSIRIV IFTSKLNLLM PFGPASIILH  60
   61 FTTRRHGLIF LFSMLGVTPL AERLGYATEQ LAIYTGPTVG GLLNATFGNA TEMIIAVYAL 120
  121 KNGMIRVVQQ SLLGSILSNM LLVMGCAFFA GGVVHRNKDQ IFSKATAVVN SGLLLMAVMG 180
  181 LMFPAVLHFT HSEVRQGASE VALSRFSSCI MLVAYASYLY FQLSGRSNIY SPIGSEEAPI 240
  241 EDTAEEDEEA EIGMWEAVTW LAVLTLWVSF LSEYLVNTIE GASDSLNLPV AFISVILLPI 300
  301 VGNAAEHASA IMFAMKDKLD ITLGVAIGSS TQISMFVIPF CVVIGWMMGQ RMDLNFQLFE 360
  361 TATLFITVLV VAFMLQDGTA NYLKGLMLIL CYLIVAASFF VHVDPQSSDG