YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24429927
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLNGAYYG PSIPPPSKSY HRHGRGSSCN PCSCLFGCLC NCIFQIIFTI LIVLGVIALV  60
   61 LWLVLRPNKV NFYVTDATLT QFDYSTTNNT LYYDLALNMT IRNPNKRIGI YYDSIEARGM 120
  121 YQGQRFASQN LERFYQGHKN TSYLHPVFKG QNLVLLGDRE KTNYNNEKNL GIYEMEMKLY 180
  181 MRIRLKIGWI KTHKIKPRIE CDFKVPLESS GRSVNFEETR CHLDW

Type	Start	End	Confidence
Cytoplasmic	1	41	0.66
Transmembrane Helix	42	65	0.88
Non-Cytoplasmic	66	225	0.74