YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3153168
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYKSTIIGL CSLALISLFP PLAWHTHSRN IPAIILITWL LIMNITCIVN AAVWSDIDFM  60
   61 NRWDGKGWCD FVIKLQVGAN IGISCAVTNI TFNLHQILKA ENVLPESNSI KKICTDLMIS 120
  121 LFTPTAVMGF SYLLQVFRYG IARYNGCQNL LSPTWITTVL YTMWMLIWSL VGTVYACLVL 180
  181 YVFYKKRKDV RDILHCTNSG LNLTRFSRLL TFCFIIILVM FPFSIFTFVQ DLRQVSGSYD 240
  241 FKGTHAKELW DVIIKFDPGK PVYSVWLYVL MSYVVFFIFG LGTDALNMYS SFLRMIGLGS 300
  301 VLDYANERIQ RNRSNRVGKL LRKLVGKTDN QATEVYGTTE HYNDIRFSPA LITPTSNNHV 360
  361 TVDYKFSKEG RDTGAYNDRF NPFEENADSF DFDKDLELGN HNFMPYITKE YNFLDDISLD 420
  421 DLTSLKGNSN GHVSSEKKSS FETYERSATS DDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.49
Transmembrane Helix	6	26	0.88
Cytoplasmic	27	32	0.51
Transmembrane Helix	33	54	0.93
Non-Cytoplasmic	55	71	0.54
Transmembrane Helix	72	92	0.52
Cytoplasmic	93	112	0.89
Transmembrane Helix	113	136	0.83
Non-Cytoplasmic	137	160	0.92
Transmembrane Helix	161	184	0.91
Cytoplasmic	185	205	0.96
Transmembrane Helix	206	229	0.87
Non-Cytoplasmic	230	265	0.96
Transmembrane Helix	266	286	0.91
Cytoplasmic	287	453	0.95