YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15146356
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATELCPVYA PFFGALGCTS AIVFTCFGAA YGTAKAGVGV CGMAVLRPDL IVKNIVPIVM  60
   61 AGIIGIYGLV VSVLIANDLA QTVPLYTGFI QLGAGLAVGL AGLAAGFAIG IVGDAGVRGT 120
  121 AQQPRLYVGM ILILIFAEVL GLYGLIVALL MNSRAKIDAK C

Type	Start	End	Confidence
Cytoplasmic	1	8	0.60
Transmembrane Helix	9	34	0.84
Non-Cytoplasmic	35	54	0.56
Transmembrane Helix	55	76	0.92
Cytoplasmic	77	87	0.50
Transmembrane Helix	88	112	0.86
Non-Cytoplasmic	113	125	0.59
Transmembrane Helix	126	150	0.87
Cytoplasmic	151	161	0.58