YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|577671
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSENESTE TDSLMTFDDY ISKELPEHLQ RLIMENLKGS TTNDLKQTSN NSEFNVSKNG  60
   61 SFKGLDDAIQ ALQMQSVLHP SSLGSLATSS KFSGWSFAQG FFVGQLSIVL LFIFFLKFFI 120
  121 FSDEPSKSKN PKPAASRHRS KFKEYPFISR EFLTSLVRKG AKQHYELNEE AENEHLQELA 180
  181 LILEKTYYNV DVHPAESLDS FNVLVAQIIQ QFRSEAWHRD NILHWLNDFI GRKSPDLPEY 240
  241 LDTIKITELD TGDDFPIFSN CRIQYSPNSG NKKLEAKIDI DLNDHLTLGV ETKLLLNYPK 300
  301 PGIAALPINL VVSIVRFQAC LTVSLTNAEE FASTSNGSSS ENGMEGNSGY FLMFSFAPEY 360
  361 RMEFQIKPLI GSRSKLENIP KIGSVIEYQI KKWFVERCVE PRFQFVRLPS MWPRSKNTRE 420
  421 EKPTEL

Type	Start	End	Confidence
Cytoplasmic	1	96	0.89
Transmembrane Helix	97	120	0.85
Non-Cytoplasmic	121	426	0.89