YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13702155, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.99
Transmembrane Helix	132	153	0.94
Non-Cytoplasmic	154	168	0.94
Transmembrane Helix	169	190	0.95
Cytoplasmic	191	200	0.87
Transmembrane Helix	201	222	0.91
Non-Cytoplasmic	223	229	0.70
Transmembrane Helix	230	251	0.89
Cytoplasmic	252	258	0.90
Transmembrane Helix	259	281	0.91
Non-Cytoplasmic	282	290	0.83
Transmembrane Helix	291	314	0.87
Cytoplasmic	315	363	0.91
Transmembrane Helix	364	385	0.90
Non-Cytoplasmic	386	401	0.86
Transmembrane Helix	402	424	0.92
Cytoplasmic	425	444	0.96
Transmembrane Helix	445	466	0.94
Non-Cytoplasmic	467	472	0.80
Transmembrane Helix	473	495	0.89
Cytoplasmic	496	514	0.84
Transmembrane Helix	515	534	0.88
Non-Cytoplasmic	535	540	0.84
Transmembrane Helix	541	563	0.91
Cytoplasmic	564	581	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHATDSTLD NASVDSEKVR DFGDDLQNHP VQPTRSILSK IRSRDDDARS LVSNNKGVER  60
   61 IISDLQEGAG QLGPLEQPYD IKKIETHPDP HTDYNEADPW KYPIDSESGL RLVEWVDGDK 120
  121 HNPKNISKAK KWLYTLVLGA ICFVVALGSA IVTGDMERPA EYFGVSEEVI ILASVTVFVI 180
  181 GFGVGPLVFA PMSEEVGRKP IYVVTLFIAV VFIVPCGAAK NIATLIVCRL IDGIAFSAPM 240
  241 TLIGGSLADI WEGPERGTAM AIFSAAPFLG PVCGPIFGGL LCDHAPTWRW IYWTFLIVAG 300
  301 VFYAIFIAIV PETHHGILLK KRAKKLRKET GDSRYRSFNE LQIRSFGEVA KTSLLRPFVL 360
  361 LSELIVFLMT IYMAICYGLL YMFFFAYPVV YQQGKGWSAS LTGVMFIPIG VGVIIATIAA 420
  421 PFFNKDYNRR AQVYRDRGEL PPPELRLIPM MIACWFVPVG LFAFAWSSYT WVSWAGPCFS 480
  481 GLAAGFGFCC LYNPANNYIV DSYQHYAASA LAAKTFVRSI WGACVPLFTI QMYHRLGDQW 540
  541 ATSLMAFISL ACCAIPYLFF FFGARVRTFS RYAYTPETNT K