YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4512263
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.95
Transmembrane Helix	61	83	0.71
Non-Cytoplasmic	84	90	0.57
Transmembrane Helix	91	111	0.74
Cytoplasmic	112	118	0.59
Transmembrane Helix	119	145	0.68
Non-Cytoplasmic	146	156	0.57
Transmembrane Helix	157	180	0.88
Cytoplasmic	181	190	0.54
Transmembrane Helix	191	214	0.88
Non-Cytoplasmic	215	225	0.58
Transmembrane Helix	226	246	0.91
Cytoplasmic	247	281	0.60
Transmembrane Helix	282	303	0.89
Non-Cytoplasmic	304	310	0.53
Transmembrane Helix	311	336	0.78
Cytoplasmic	337	347	0.53
Transmembrane Helix	348	373	0.86
Non-Cytoplasmic	374	380	0.54
Transmembrane Helix	381	400	0.93
Cytoplasmic	401	406	0.54
Transmembrane Helix	407	427	0.91
Non-Cytoplasmic	428	435	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGEESFDL ESDEVPLSSS HGASKMETLH YEAPHNHIAS PRAFVSTRLL RKMRQISVLR  60
   61 SIYIVLIKAK INVLLPFGPL AILLHHVTGK HAWVFFFSLL GIIPLAERLG YATEQLSFYT 120
  121 GPTVGGLLNA TFGNATEMII SIYALKNDMI RVVKQSLLGS ILSNMLLVLG CAFFSGGIIH 180
  181 HKKVQVFNKA TAIVNSGLLL MAVMGLLFPA VLHFTRTEVH FGKSELALSR FSSCIMLVAY 240
  241 ASYLFFQLKS ERSSYTSIDE EGENNAEDPD EEEAPEITHW EAIGWLAILT IWISVLSGYL 300
  301 VDAIEGASDT LNMPVAFISV ILLPIVGNAA EHASAIMFAM KDKLDISLGV AIGSSTQISM 360
  361 FVIPFCVVVG WFMGKDMDLN FQLFETATLF ITVLVVAFML QEGTSNYFKG LMLILCYLIV 420
  421 AASFFVHNDQ SNDKL