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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18146714
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSNVSYNP LPDGERPRPT RRRSIVLVLS GLLVVGFLVA LLSDNGSITP ANVIDNDNNN  60
   61 VNDNAKNGLN DVSSSSKEPE RLRPFTSASS AGVSEKSNRR FGSRTASYPW TNNMLSWQRT 120
  121 AFHFQPQKNW MNDPNGPVFY KGWYHLFYQY NPNGAIWGDI VWGHAVSKDL IHWYHLPLAM 180
  181 VADQWYDIMG VWTGSATILP DGKLMMLYTG STNESVQVQN LAYPADPSDP LLIKWVKYPG 240
  241 NPVLVPPPGI GSKDFRDPTT AWLTSEGKWR IAIGSRINRT GITFVYDTKD FINYELLRGV 300
  301 LHGVPNTGMW ECVDFYPVST TGEHGLDTSH NGLGVKHVVK ASMDDDRHDY YAIGTYHEKN 360
  361 VTWVPDNPEI DVGIGIRYDY GLFYASKTFY DQNKKRRVLW GWIGESDSEI ADVKKGWASL 420
  421 QGIPRTVALD TKTGSNLLQW PVEEVDSLRL TSKEFKKIEL KPGSVMPLDV GSATQLDIVA 480
  481 EFELDKAALE KTAESNVEFS CSSSEGSAER GALGPFGLLV LADDSLSEQT PVYFYIAKGK 540
  541 DGSLKTYFCT DQSRSSEAND VNKSKYGSFV PVLEGEKFSM RVLVDHSIVE GFAQGGRTTI 600
  601 TSRVYPTKAI YGAARVFLFN NATGASVTSS LKAWQMNSAF IRPYPDDDDE RHSGTEPTHE 660
  661 VRGSKTKYLG NLLTSSLLFL NARNNFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle