YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13486938
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVEVAEH GEFAAKDYHD PPPTPLFDAE ELTKWSFYRA LIAEFIATLL FLYITVLTVI  60
   61 GYKSQSEADQ CGGVGILGIA WAFGGMIFVL VYCTAGISGG HINPAVTFGL FLARKVSLIR 120
  121 AVLYIIAQCL GAICGVGLVK AFQKSYYVKY GGGANELSAG YNKGTGLGAE IIGTFVLVYT 180
  181 VFSATDPKRN ARDSHVPVLA PLPIGFAVFI VHLATIPITG TGINPARSLG AAVIYNKDKA 240
  241 WDDQWIFWLG PFIGAAIAAF YHQYILRAGA IKALGSFRSN A

Type	Start	End	Confidence
Cytoplasmic	1	39	0.91
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	76	0.82
Transmembrane Helix	77	100	0.85
Cytoplasmic	101	120	0.76
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	163	0.91
Transmembrane Helix	164	183	0.91
Cytoplasmic	184	195	0.85
Transmembrane Helix	196	216	0.89
Non-Cytoplasmic	217	244	0.88
Transmembrane Helix	245	265	0.93
Cytoplasmic	266	281	0.93