YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6705993
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	53	0.86
Non-Cytoplasmic	54	69	0.89
Transmembrane Helix	70	91	0.94
Cytoplasmic	92	104	0.89
Transmembrane Helix	105	124	0.96
Non-Cytoplasmic	125	141	0.81
Transmembrane Helix	142	161	0.88
Cytoplasmic	162	181	0.90
Transmembrane Helix	182	202	0.93
Non-Cytoplasmic	203	222	0.92
Transmembrane Helix	223	247	0.83
Cytoplasmic	248	285	0.97
Transmembrane Helix	286	306	0.92
Non-Cytoplasmic	307	332	0.93
Transmembrane Helix	333	355	0.87
Cytoplasmic	356	362	0.84
Transmembrane Helix	363	386	0.87
Non-Cytoplasmic	387	406	0.90
Transmembrane Helix	407	428	0.88
Cytoplasmic	429	442	0.68
Transmembrane Helix	443	465	0.83
Non-Cytoplasmic	466	475	0.83
Transmembrane Helix	476	497	0.94
Cytoplasmic	498	515	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGTKELNK PQPPSSAAMQ LQTPVQKIPT ATWKLVLVAA IAAGVQFGWA LQLSLLTPYV  60
   61 QLLGIPHKWA AYIWLCGPIS GMLVQPIVGY YSDHCQSSFG RRRPFIASGA GCVAISVILI 120
  121 GFAADIGYKA GDDMSKTLKP RAVTVFVIGF WILDVANNML QGPCRALLAD LCSGDTRRMR 180
  181 SANAFYSFFM AVGNILGYAA GSYNNLYKLF PFSKTHACDL YCANLKSCFI ISIALLIIIT 240
  241 VVALSVVREK QWSPDDADAA DEPPSSGKIP VFGELLGALK DLPRPMLLLL IVTCLNWIAW 300
  301 FPFILFDTDW MGREIYGGTA GKGKLYDQGV RAGSLGLLLN SVVLGLTSIA VEYLVRGVGG 360
  361 VKILWGVVNF ILAIGLVMTV VVSKVAQHQR EHSANGQLLP PSAGVKAGAL SLFSILGIPL 420
  421 SITYSIPFAL ASIYSSGSGA GQGLSLGVLN LAIVVPQMIV SVLAGPFDSL FGGGNLPAFV 480
  481 VGAISAAISG VLAIVLLPKP SKDAASKLSL SGTYH