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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5821294
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGVRNIYHH SYTLSFLLVF FVWILFRPAF SINTLSSTES LTISSNRTLV SPGNVFELGF  60
   61 FKTTSSSRWY LGIWYKKFPY RTYVWVANRD NPLSNDIGTL KISGNNLVLL DHSNKSVWST 120
  121 NVTRGNERSP VVAELLDNGN FVMRDSNSNN ASQFLWQSFD YPTDTLLPEM KLGYDLKTGL 180
  181 NRFLTSWRSS DDPSSGDYSY KLEPGRLPEF YLWKGNIRTH RSGPWSGIQF SGIPEDQRLS 240
  241 YMVYNFTENR EEVAYTFQMT NNSFYSILTI SSTGYFQRLT WAPSSVVWNV FWSSPNHQCD 300
  301 MYRICGPYTY CDVNTSPSCN CIQGFNPENV QQWALRIPIS GCKRRTRLSC NGDGFTRMKN 360
  361 MKLPDTTMAI VDRSIGVKEC KKRCLGDCNC TAFANADIRN GGTGCVIWTG ELADIRNYAD 420
  421 GGQDLYVRLA AADLVKKRDA NWKIIIVGVS VVLLLLLLIM FCLWKRKQNR AKAMATSIVN 480
  481 QQRNQNVLMN GMTQSNKRQL SRENKTEEFE LPLIELEAVV KATENFSNCN ELGQGGFGIV 540
  541 YKGMLDGQEV AVKRLSKTSL QGIDEFMNEV RLIARLQHIN LVRILGCCIE ADEKILIYEY 600
  601 LENSSLDYFL FGKKRSSNLN WKDRFAITNG VARGLLYLHQ DSRFRIIHRD LKPGNILLDK 660
  661 YMIPKISDFG MARIFARDET QAMTDNAVGT YGYMSPEYAM DGVISEKTDV FSFGVIVLEI 720
  721 VSGKRNRGFY QVNPENNLLS YAWSHWAEGR ALEIVDPVIV DSLSSLPSTF QPKEVLKCIQ 780
  781 IGLLCIQERA EHRPTMSSVV WMLGSEATEI PQPKPPVYCL IASYYANNPS SSRQFDDDES 840
  841 WTVNKYTCSV IDAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle