YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10120604, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSTASASA KKIIVKHVTV IGGGLMGAGI AQVAAATGHT VVLVDQTEDI LAKSKKGIEE  60
   61 SLRKVAKKKF AENPKAGDEF VEKTLSTIAT STDAASVVHS TDLVVEAIVE NLKVKNELFK 120
  121 RLDKFAAEHT IFASNTSSLQ ITSIANATTR QDRFAGLHFF NPVPVMKLVE VIKTPMTSQK 180
  181 TFESLVDFSK ALGKHPVSCK DTPGFIVNRL LVPYLMEAIR LYERGDASKE DIDTAMKLGA 240
  241 GYPMGPFELL DYVGLDTTKF IVDGWHEMDA ENPLHQPSPS LNKLVAENKF GKKTGEGFYK 300
  301 YK

Type	Start	End	Confidence
Cytoplasmic	1	16	0.74
Transmembrane Helix	17	36	0.78
Non-Cytoplasmic	37	302	0.98