YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47522372, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLRCHRSK YIWATLGVLA LLWLYIFPVY RIPSDKEMVE EVLRQGQTWS RNQTAVELYR  60
   61 KLLTDCCNPK RMFAVTKENS PLGKVLWYDG EFYHYHTVTN ETYPIFVQDT PLQLPLKRCS 120
  121 VVGNGGVLKH SGCGNEIDRA DFIMRCNLPP LSKDYTDDVG TKTHLVSANP SIIEKSFQNL 180
  181 LWSRKSFVES MKAYGSSYIY IPAFSMKPGT DPSLRAYHAL ADSSSNQTVL FANPDFLKNV 240
  241 GIFWKNHGVH GKRLSTGLFL VSLALGLCEE VTAYGFWPFS VGLDERPVSH HYYDNILPSS 300
  301 RFHAMPEEFL QLWHLHKSGT LRMRVGSCAK ERMELKREK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.75
Transmembrane Helix	11	29	0.79
Non-Cytoplasmic	30	339	0.97