YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44890030
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGTINPN INPERTVAGR GTQEEEGEIA RVEHNHHNNA ASVSTDETVL ERSKEIGDED  60
   61 VAVEEVTRLA RQLTRQSTRF STSGNVENPF LETKEDSTLN PLSPNFKAKN WMKNLLALSS 120
  121 RDPERYPKRV AGVAFKNLSV HGYGSPTDYQ KDVFNSVLEV GTLVRRIMGT GKQKIQILRD 180
  181 FDGLVKSGEM LVVLGRPGSG CSTFLKTISG EMNGIYMDEK SYLNYQGISS KQMRKQFRGE 240
  241 AIYTAETDVH FPQLTVGDTL KFAALARAPR NRLPGVSREQ YAVHMRDVVM AMLGLTHTMN 300
  301 TRVGNDFVRG VSGGERKRVS IAEATLSGSP LQCWDNSTRG LDSANALEFC KTLNLMTKYA 360
  361 GATVAVAIYQ ASQSAYDVFD KVTVLYEGRQ IYFGRTDEAK EFFTNMGFEC PERQTTADFL 420
  421 TSLTSPAERV VKPGFEGKVP QTPDEFVRAW KSSEAYAKLM REIEEYDREF PIGGESLNQF 480
  481 IESRRAMQAK NQRVKSPYTI SVWQQIELCM IRGFQRLKGD SSLTMSQLIG NFIMALVIGS 540
  541 VFYNLPDDTS SFYARGALLF FAVLLNAFSS ALEILTLYAQ RPIVEKQARY AMYHPFAEAI 600
  601 ASMLCDMPYK ITNAIIFNLT LYFMTNLRRE PGAFFVFLLF SFVTTLTMSM LFRTMAASSR 660
  661 TLSQALVPAA ILILGLVIYT GFTIPTRNML GWSRWMNYID PIAYGFESLM VNEFHNRQFL 720
  721 CPDSAFVPSS GAYDSQPLAY RVCSTVGSVS GSRYVQGDDY LNQSFQYYKS HQWRNLGIMF 780
  781 GFMFFFMFTY LTATEYISES KSKGEVLLFR RGHAQPTGSH DVEKSPEVSS AAKTDEASSK 840
  841 EATGAIQRQE AIFQWKDVCY DIKIKGEPRR ILDHVDGWVK PGTCTALMGV SGAGKTTLLD 900
  901 VLATRVTMGV VSGEMLVDGR PRDQSFQRKT GYVQQQDLHL HTTTVREALR FSALLRQPAH 960
  961 VPRQEKIDYV EEVIKLLGME SYADAVVGVP GEGLNVEQRK RLTIGVELAA KPQLLLFLDE1020
 1021 PTSGLDSQTS WSILDLIDTL TKHGQAILCT IHQPSAMLFQ RFDRLLFLAK GGKTVYFGEI1080
 1081 GEKSSTLASY FERNGAPKLP PDANPAEWML EVIGAAPGSH SDIDWPAVWR DSPERRAVHE1140
 1141 HLDELKRTLS QKPIDPSKAD PGSYDEFAAP FTIQLWECLL RVFSQYWRTP VYIYSKTALC1200
 1201 VLTALYIGFS FFNAQNSAQG LQNQMFSIFM LMTIFGNLVQ QIMPNFCTQR SLYEVRERPS1260
 1261 KTYSWKAFMA ANIIVELPWN TLMAFLIFVC WYYPIGLYRN AEPTDSVHER GALMFLLIWS1320
 1321 FLLFTSTFAH MMIAGIELAE TGGNLANLLF SLCLIFCGVL APPQSLPGFW IFMYRVSPFT1380
 1381 YLVSAMLSTG VSGTNAVCEP VEFLHFDPPS NMTCKDYMAD YISTRGGYLE NPSATSDCTF1440
 1441 CTISSTDTFL SAVSSHYSDA WRNFGIMWAY IIFNIFAAVF IYWLARVPKG KRTKGST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle