YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20145256
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.99
Transmembrane Helix	73	95	0.90
Non-Cytoplasmic	96	109	0.83
Transmembrane Helix	110	130	0.93
Cytoplasmic	131	139	0.78
Transmembrane Helix	140	159	0.92
Non-Cytoplasmic	160	165	0.82
Transmembrane Helix	166	188	0.90
Cytoplasmic	189	197	0.84
Transmembrane Helix	198	221	0.88
Non-Cytoplasmic	222	229	0.79
Transmembrane Helix	230	254	0.84
Cytoplasmic	255	305	0.94
Transmembrane Helix	306	326	0.91
Non-Cytoplasmic	327	341	0.86
Transmembrane Helix	342	363	0.92
Cytoplasmic	364	383	0.95
Transmembrane Helix	384	404	0.95
Non-Cytoplasmic	405	409	0.88
Transmembrane Helix	410	433	0.92
Cytoplasmic	434	440	0.79
Transmembrane Helix	441	463	0.86
Non-Cytoplasmic	464	475	0.77
Transmembrane Helix	476	498	0.92
Cytoplasmic	499	668	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEKGDQNA EKIEQSLPQK IPYWRLVVDQ GVLTQQIIDY PYKGSGTEED PYEVVWMEND  60
   61 PRNPMTWTQL RKWSLTMTVA VSTLAVALVS SAYTGGVREI EAEFHIGSEV ATLGVSLFVL 120
  121 GFAIGPLLWA PLSEMFGRQI IFTVTYCALT AFNAGSAGAQ NSWTLIILRF FAGAFGASPL 180
  181 TNAGGVIADM FHAKQRGIAM SLFAAAPFLG PVLGPIIGGF LGMNAGWRWV MGFLGAFSGA 240
  241 VWIICTIFVP ETYAPVLLRR RAEKLSKHTG KVYVSKIDID QGRVTLKDAF KTALSRPWIL 300
  301 LFKEPIVFLL SLYMAIIYGT LYMLFSAYPI VFQGVRHWNQ GVSSLPFLGI MVGMMFAVTY 360
  361 SVWDNKRYVQ VQAKHGGFAP PEARLPPTLI ASVAIPIGLF WFAWTNYPSI HWIVCILAGA 420
  421 PFGFGMVLVF LGIMNYLIDA YTIFAASVLA ANSVLRSIFG AVFPLFTTYM YEDLGIHWAS 480
  481 SIPAFLALAC VPFPFLFYKY GATIRKRCEY AAKSDAFMRK LAEQMKQAPE PESEETEEPV 540
  541 FDRTEAPAPD VSDVSETESN VEELPDVRQM RSRASTRTAS SLRRVVSYEG NPYDIDRVNT 600
  601 RESRYPRPLS RTHGQSICTL IMAGKVCPCS KIIYPTDVDS AHVLLSLHYR WRLCIGENWC 660
  661 IYPVQLTI