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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42820661
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGAVEVASS PVFPSLDPIV VDDEMENPYQ DTDLNFLDST RLQMNEAAGQ DFDDLFARSH  60
   61 SSHTVTDSES VCLSPSELSI KRHFQEHDAL RQPKIVASDS PAESLDNSSP SSSSDSPRNH 120
  121 GRNTSVASTT SVTNSDQANI MPFGYATEDW INSELGSMKE ETSMFGFDPS LPAMESVFPV 180
  181 ETDLESSNKA MDAAFDFESA ASSPSALKTD PTAQPKIQKR PKSQMRGTSH SIPRQSASPQ 240
  241 SRHSVSPFTA GKMPSQSRSS SSHWAGQSPS SLLEESFGGI NMNGGSPLNG NFNFASNGFP 300
  301 FGINFAPSPP QNNMKAEATQ RHVLTVHPTS LKSRVETQIP IRLTLYPMPS GVKKLRLPTH 360
  361 TISKPKFLAP PSADRSADTL QLHTSLVCTS AMQDQTKLRK AFARARGETR YRASSSSPNA 420
  421 TEELPEDDKP LDGGEVKICA GCIQRERKRA FRKKQRKPEE DELFQKDEEK RVIVFNTNEI 480
  481 KDWAEPSKHA MPGYTDAPAP VIPAGAMQVE LPMRIACYCR HQNEKLGFQV IFTVKDHMDN 540
  541 VIAQAITNSI MITDDHKTHA PPAPPAPGPS PSLPDGTQLP GVGVFPSGLP VETAKSPVQS 600
  601 FRSSSTTDLQ GLQQRFNSQY QMSTGSFTTS AQNGQNGQKN ATASSQTPRS LSRQTSPNDF 660
  661 PGPMTKRRKH SNSGRLPSDL TMTKLENGQS SVGGSNSGVL GNDTSFNAAR GFASPAERPF 720
  721 VTPSAMSGQF ANRPPTPNSG DNNPFFNPSA TQTSLDTFIQ QQLMSAPNSA QPSRPGTPGN 780
  781 SARHGFQDQS INISLGSSTS TPAWPPLTNA GNRLPSVIHK VVPAEGSITG GTEVTLLGSG 840
  841 FYPGMEVVFG DTLATTTTFW GDKCLNCLTP PALQPGMVAV VFKHEHPTFG QMQPAQPLMP 900
  901 KQQQFFRYVD DRELQMYRLA LGILGQKLGN QADAFQTAQQ IMGSDPKAVF NLQKDFSAGS 960
  961 GGHQRQVPGL ESQGELSDLD SKMLTYLEFI DLDDNPRPPK YNSRCATGQT LLHFASSLGL1020
 1021 TRFVAGLLAR GANPEVQDNI GNTPMHLAAL HGHAHIVNKL RLAGADVNAR SIRGFTPADL1080
 1081 ATTLPAHQAA LIPARHNRSR SVGSVTSSRR RHSSSASLHS LWESSSVSGS IDPAVYDSHD1140
 1141 EEDDSDDQVD FTISRRSSVH QDVPGPLPSP EQATAAQEAR PFSPPAALVA WRNQLQAQIN1200
 1201 QFQQSVANAF PNLPALPPMP ALPDYQAHPM MRRITNLVPH RPTTSWSSKD GWWDLLTGNS1260
 1261 APSATEPPSY EELYPGQDRQ DEEEASQLKK ATLLRAAAEA AVDQHFESQA NTSVAESSKQ1320
 1321 DNDDIKDIRI GSKLISREQQ KHLREQQARR MKGLGSDRNL YFIWLPLLLL VICAWMRSYV1380
 1381 PGIWQGALDV YGFVKTRYMR GTLDVGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle