YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41581287
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	381	0.99
Transmembrane Helix	382	402	0.90
Cytoplasmic	403	416	0.89
Transmembrane Helix	417	438	0.93
Non-Cytoplasmic	439	443	0.79
Transmembrane Helix	444	465	0.89
Cytoplasmic	466	550	0.98
Transmembrane Helix	551	571	0.93
Non-Cytoplasmic	572	576	0.90
Transmembrane Helix	577	595	0.93
Cytoplasmic	596	610	0.75
Transmembrane Helix	611	629	0.85
Non-Cytoplasmic	630	640	0.63
Transmembrane Helix	641	663	0.77
Cytoplasmic	664	802	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNRGSFFFL LIVFYLLLSS QSRPPLLDQD RERQREVARE RDALRLLNES KYGDFDPPGD  60
   61 KWLPFAGTRK NDSYAWGILP EAQGRARHQL RSAISNAGLE PPRSLEDPDA LPSLNLTQLL 120
  121 LPVYRNATGK LRGDWVRRKL NKEYPKLNTT AIALEHGYFT HEFGLNITGS SGTFYLDLRE 180
  181 GGGEELRVDS GQVREIRATL AVESNDFWGN TWYISLFGVH FPETGAIILS SNSEKFEGLF 240
  241 VLPHLAFSSD AYELSHQLLL NSLSDTLSEK ENRPPTLFPW SSLIGSEQVE FPAPKCEHII 300
  301 YLQQHPVTIH DYLADKPVVD QIEEELRFPI GAPVPPAPLM VMSAVVFSPD CGYILETKGT 360
  361 PDFPPSEGLY LTGPKIEEYD KYSARLVFII CGVFAAQITL LLRQIKEAST PSTRSRISFY 420
  421 TIALMAFGDA FVLIFILLEL YPAVSFLVMA TAAFLTFLSV SYIGMKFMME IWAVQAPERR 480
  481 EQERRSNPPA STPRSTGLPL PATSAPVRDS GATPIILTPD QDPPAEEDDQ PTNRGTTSAA 540
  541 QETRNDVGAM YARFYFVLFV MLIISIWSFL WPNRLGALYA RALAFVYLSF WTPQIGRNII 600
  601 RNCRKALRWD FVIGQSILRL FPFVYFLTVR GNVLFIHPDT TTAFALAGWV WIQVWVLASQ 660
  661 DILGPRFFVP RGWAPAAYDY HPILRDGDES EADLESGGVL PIGALRAEDL SGDAKDEDKQ 720
  721 RTKDRKRAVF DCAICMQEIE VPVLAARGSA GGSSVTEGAT SILSRRTYMV TPCRHIFHST 780
  781 CLESWMRLRL QCPICRESIP PV