YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41581252
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRGTAGY NLGHQNPFVG PGRADATSDP SPLDAIREQT SKIEDWLDTI SDPVKPYLPA  60
   61 IGRFLIVVTF IEDSLRIITQ WSDQLVYLRE YRKNLSHDIL CPVPWGITHT FLILNVIAMS 120
  121 VCSFLVITRR HTEIAVAGLL GVVVTQGLGY GLIFDLNFFL RNLSVVGGLL MVLSDSWVRK 180
  181 KFVPAGLPQL DEKDRKMYVQ FAGRVLLIFL FVGFVFSGQW SLWRVLVSLF GFVACVMVIV 240
  241 GFKAKWSAII LVVLLSVFNV LVNNFWTLHP HHPHKDFAKY DFFQILSIVG GLLLLVNMGP 300
  301 GQLSMDEKKK VY

Type	Start	End	Confidence
Cytoplasmic	1	59	0.53
Transmembrane Helix	60	75	0.44
Non-Cytoplasmic	76	104	0.86
Transmembrane Helix	105	127	0.89
Cytoplasmic	128	133	0.84
Transmembrane Helix	134	154	0.90
Non-Cytoplasmic	155	158	0.82
Transmembrane Helix	159	178	0.91
Cytoplasmic	179	196	0.95
Transmembrane Helix	197	216	0.91
Non-Cytoplasmic	217	221	0.72
Transmembrane Helix	222	242	0.90
Cytoplasmic	243	248	0.78
Transmembrane Helix	249	268	0.94
Non-Cytoplasmic	269	281	0.82
Transmembrane Helix	282	301	0.92
Cytoplasmic	302	312	0.87