YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3882199
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	565	0.91
Transmembrane Helix	566	587	0.89
Cytoplasmic	588	599	0.70
Transmembrane Helix	600	620	0.84
Non-Cytoplasmic	621	650	0.72
Transmembrane Helix	651	675	0.80
Cytoplasmic	676	681	0.66
Transmembrane Helix	682	701	0.76
Non-Cytoplasmic	702	779	0.95
Transmembrane Helix	780	798	0.93
Cytoplasmic	799	813	0.86
Transmembrane Helix	814	835	0.90
Non-Cytoplasmic	836	865	0.93
Transmembrane Helix	866	885	0.96
Cytoplasmic	886	905	0.89
Transmembrane Helix	906	931	0.86
Non-Cytoplasmic	932	965	0.84
Transmembrane Helix	966	985	0.90
Cytoplasmic	986	991	0.58
Transmembrane Helix	992	1011	0.74
Non-Cytoplasmic	1012	1048	0.58
Transmembrane Helix	1049	1075	0.77
Cytoplasmic	1076	1130	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLPREELQAT ATSRERRQEG PAWPSPFILL SGVVRRKRKR RRLAEEEDNY IESVVKFRSM  60
   61 FNKNNSNKLR STPRYRRGDP GYLNFTELGP LKPEQKDQWS QHRPDEEAVV DQGGTSTILN 120
  121 IHYEKEELEG HRTLYVGVRM PLGRQSHRHH RTHGQKHRRR GRGKGASQGE EGLEALAHDT 180
  181 PSQRVQFILG TEEDEEHVPH ELFTELDEIC MKEGEDAEWK ETARWLKFEE DVEDGGERWS 240
  241 KPYVATLSLH SLFELRSCLI NGTVLLDMHA NSIEEISDLI LDQQELSSDL NDSMRVKVRE 300
  301 ALLKKHHHQN EKKRNNLIPI VRSFAEVGKK QSDPHLMDKH GQTVSPQSVP TTNLEVKNGV 360
  361 NCEHSPVDLS KVDLHFMKKI PTGAEASNVL VGEVDILDRP IVAFVRLSPA VLLSGLTEVP 420
  421 IPTRFLFILL GPVGKGQQYH EIGRSMATIM TDEIFHDVAY KAKERDDLLA GIDEFLDQVT 480
  481 VLPPGEWDPS IRIEPPKNVP SQEKRKMPGV PNGNVCHIEQ EPHGGHSGPE LQRTGRLFGG 540
  541 LVLDIKRKAP WYWSDYRDAL SLQCLASFLF LYCACMSPVI TFGGLLGEAT EGRISAIESL 600
  601 FGASMTGIAY SLFAGQALTI LGSTGPVLVF EKILFKFCKD YALSYLSLRA CIGLWTAFLC 660
  661 IVLVATDASS LVCYITRFTE EAFASLICII FIYEAIEKLI HLAETYPIHM HSQLDHLSLY 720
  721 YCRCTLPENP NNHTLQYWKD HNIVTAEVHW ANLTVSECQE MHGEFMGSAC GHHGPYTPDV 780
  781 LFWSCILFFT TFILSSTLKT FKTSRYFPTR VRSMVSDFAV FLTIFTMVII DFLIGVPSPK 840
  841 LQVPSVFKPT RDDRGWIINP IGPNPWWTVI AAIIPALLCT ILIFMDQQIT AVIINRKEHK 900
  901 LKKGCGYHLD LLMVAIMLGV CSIMGLPWFV AATVLSITHV NSLKLESECS APGEQPKFLG 960
  961 IREQRVTGLM IFVLMGCSVF MTAILKFIPM PVLYGVFLYM GVSSLQGIQF FDRLKLFGMP1020
 1021 AKHQPDFIYL RHVPLRKVHL FTLIQLTCLV LLWVIKASPA AIVFPMMVLA LVFVRKVMDL1080
 1081 CFSKRELSWL DDLMPESKKK KLDDAKKKAK EEEVIVLAPT VYLGASNYRT