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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7243013
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VILHPSISVR LAAAWCLHCI AVALPSYLTP LLDRCLERLT GHKSSPEAVT GFSFAVAALL  60
   61 GAVKHCPLGI PHGKGKIIMT LAEDLLCSAA QNSRLSAQRT QAGWLLISAL MTLGPAVVSH 120
  121 HLARVLLLWK CVFPASPKDL ETEKSRGDSF TWQVTLEGRA GALCAIKSFV SHCGDLLTEE 180
  181 VTQRLLPPLP CAVDLLTQLS SILKMYGSPL KTPSVVYRQR LYELLILLPP ETYEGNLCAI 240
  241 LRELAADLTA PDIQVAASTF LLPPLCHQDD LLILSPFLQE TDHRFIEEQL LLGNGVACGS 300
  301 LEYDPYSIYE KDVEGDSVPK PLPPALSVIS SASKLFGVVC AHVGETQRLL ILEQLLDSIK 360
  361 HTKGARQQVV QLHVVSSVSS FLKYVAGSKG CLGPEEMKRF ALTLVMGALE SPNPLLRCAA 420
  421 AESWARLAQM VDDGAFTAGL AQVSFDKLKS ARDVVTRTGH SLALGSLHRY LGGISSSQHL 480
  481 NSCIGILYTL AQDSTSPDVQ TWALHSLSLI IDSAGPLYYV HVEPTLSLII MLLLNVPPTH 540
  541 AEVHQSLGRC LNALITTLGP ELQGNSTSIS TLRTSCLLGC AVMQDNPDCL VQAQAISCLQ 600
  601 QLHMFAPRHV NLSSLVSCLC VNLCSPYLLL RRAVLACLRQ LVQREAAEVS EHAVMLAKDS 660
  661 REELTPDANI REVGLEGALL ILLDKETDER LCHDIKETLN YMLTSMAVEK LSLWLKLCKD 720
  721 VLAASADFTA VTCVDTMQEE EGDKGDDASV LTTRRDEKSH PFTNPRWATR VFAAECVCRI 780
  781 INQCENANSA HFDIALAQEM KKRDSRNDFL VLHLADLIRM AFMAATDHSD QLRLSGLEML 840
  841 LVVIRRFATV PEPEFPGHVI LEQYQANVGA ALRPAFTSET PPDVTAKACQ VCSAWIASGV 900
  901 VSDLNDLRRV HQLLVSSLTK IQAGKEALSH LYNESASTME ILAVLKAWAE VYIIAVQRHK 960
  961 NHRQPLKTTT CLEDGIRNGS CSSDGLLDLV YADLGTLSRL WLAALQDFAL LTLPSEFASQ1020
 1021 LPAEGGAFYT AETSENAKLH YYNSWALILH ATALWLTSTG FVVADPDEGA SNLSRPVTPT1080
 1081 SMCQGSSSGA TIKSPEDVYT DRFHLILGIS VEFLCSLRSD ATMESITACL HALQALLDVP1140
 1141 WPRSKIGSDQ DLGIELLNVL HRVILTRESP SIQLASLEVV RQIICAAQEH VKEKRRSAEV1200
 1201 DDGAAEKETL PEFGEGKDTG GLVPGKSLVF ATLELCVCIL VRQLPELNPK LTGSPGVKAT1260
 1261 KPQILLEDGS RLVSAALVIL SELPAVCSPE GSISILPTIL YLTIGVLRET AVKLPGGQLS1320
 1321 STVAASLQAL KGILSSPMAR AEKSRTAWTD LLRSALTTIL DCWDPVDETH QELDEVSLLT1380
 1381 AITVFILSTS PEVTTIPCLQ KRCIDKFKAT LEIKDPVVQI KTYQLLHSIF QYPNPAVSYP1440
 1441 YIYSLASCIM EKLQEIDKRK PENTAELEIF QEGIKVLETL VTVAEEHHRA QLVACLLPIL1500
 1501 ISFLLDENSL GSATSIMRNL HDFALQNLMQ IGPQYSSVFK SLVASSPALK ARLEAAIKGN1560
 1561 QESVKVKIPT SKYTKSPGKN SSIQLKTSFL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle