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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4704324
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRTVSEIRS RAEGYEKTDD VSEKTSLADQ EEVRTIFINQ PQLTKFCNNH VSTAKYNIIT  60
   61 FLPRFLYSQF RRAANSFFLF IALLQQIPDV SPTGRYTTLV PLLFILAVAA IKEIIEDIKR 120
  121 HKADNAVNKK QTQVLRNGAW EIVHWEKVAV GEIVKVTNGE HLPADLISLS SSEPQAMCYI 180
  181 ETSNLDGETN LKIRQGLPAT SDIKDVDSLM RISGRIECES PNRHLYDFVG NIRLDGHGTV 240
  241 PLGADQILLR GAQLRNTQWV HGIVVYTGHD TKLMQNSTSP PLKLSNVERI TNVQILILFC 300
  301 ILIAMSLVCS VGSAIWNRRH SGKDWYLNLN YGGASNFGLN FLTFIILFNN LIPISLLVTL 360
  361 KVVKFTQAYF INWDLDMHYE PTDTAAMART SNLNEELGQV KYIFSDKTGT LTCNVMQFKK 420
  421 CTIAGVAYGH VPEPEDYGCS PDEWQNSQFG DEKTFSDSSL LENLQNNHPT APIICEFLTM 480
  481 MAVCHTAVPE REGDKIIYQA ASPDEGALVR AAKQLNFVFT GRTPDSVIID SLGQEERYEL 540
  541 LNVLEFTSAR KRMSVIVRTP SGKLRLYCKG ADTVIYDRLA ETSKYKEITL KHLEQFATEG 600
  601 LRTLCFAVAE ISESDFQEWR AVYQRASTSV QNRLLKLEES YELIEKNLQL LGATAIEDKL 660
  661 QDQVPETIET LMKADIKIWI LTGDKQETAI NIGHSCKLLK KNMGMIVINE GSLDGTRETL 720
  721 SRHCTTLGDA LRKENDFALI IDGKTLKYAL TFGVRQYFLD LALSCKAVIC CRVSPLQKSE 780
  781 VVEMVKKQVK VVTLAIGDGA NDVSMIQTAH VGVGISGNEG LQAANSSDYS IAQFKYLKNL 840
  841 LMIHGAWNYN RVSKCILYCF YKNIVLYIIE IWFAFVNGFS GQILFERWCI GLYNVMFTAM 900
  901 PPLTLGIFER SCRKENMLKY PELYKTSQNA LDFNTKVFWV HCLNGLFHSV ILFWFPLKAL 960
  961 QYGTAFGNGK TSDYLLLGNF VYTFVVITVC LKAGLETSYW TWFSHIAIWG SIALWVVFFG1020
 1021 IYSSLWPAIP MAPDMSGEAA MLFSSGVFWM GLLFIPVASL LLDVVYKVIK RTAFKTLVDE1080
 1081 VQELEAKSQD PGAVVLGKSL TERAQLLKNV FKKNHVNLYR SESLQQNLLH GYAFSQDENG1140
 1141 IVSQSEVIRA YDTTKQRPDE W

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle