YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_VIBAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.74
Transmembrane Helix	20	39	0.87
Non-Cytoplasmic	40	41	0.32
Transmembrane Helix	42	60	0.49
Cytoplasmic	61	61	0.21
Transmembrane Helix	62	84	0.55
Non-Cytoplasmic	85	90	0.51
Transmembrane Helix	91	115	0.80
Cytoplasmic	116	123	0.50
Transmembrane Helix	124	146	0.66
Non-Cytoplasmic	147	147	0.34
Transmembrane Helix	148	166	0.82
Cytoplasmic	167	202	0.69
Transmembrane Helix	203	222	0.84
Non-Cytoplasmic	223	239	0.71
Transmembrane Helix	240	262	0.87
Cytoplasmic	263	305	0.72
Transmembrane Helix	306	336	0.82
Non-Cytoplasmic	337	351	0.52
Transmembrane Helix	352	371	0.93
Cytoplasmic	372	391	0.50
Transmembrane Helix	392	411	0.53
Non-Cytoplasmic	412	453	0.80
Transmembrane Helix	454	474	0.84
Cytoplasmic	475	481	0.75
Transmembrane Helix	482	503	0.89
Non-Cytoplasmic	504	528	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISLGNAFI KNFLGKAPDW YKVAIIAFLI INPIVFFLIN PFVAGWLLVA EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAIAIGM TSPAQVKHEL VANIEVLLLL VFMVAGIYFM KHLLLFIFTK 120
  121 ILLGIRSKTL LSLAFCFAAA FLSAFLDALT VIAVVISVAI GFYSIYHKVA SGNPIGDHDH 180
  181 TQDDTITELT RDDLENYRAF LRSLLMHAGV GTALGGVTTM VGEPQNLIIA DQAGWLFGEF 240
  241 LIRMSPVTLP VFFCGLITCA LVEKLKVFGY GAKLPNNVRQ ILVDFDNEER KTRTNQDVAK 300
  301 LWVQGLIAVW LIVALALHLA AVGLIGLSVI ILATAFTGVI EEHSMGKAFE EALPFTALLA 360
  361 VFFSIVAVII DQELFKPVID AVLAVEDKGT QLALFYVANG LLSMVSDNVF VGTVYINEVK 420
  421 TALIEGLITR EQFDLLAVAI NTGTNLPSVA TPNGQAAFLF LLTSALAPLI RLSYGRMVIM 480
  481 ALPYTIVLAI VGLMGIMFFL EPATASFYDA GWILPHSGDL TPVVSGGH