YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NMUR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLENASWI HDPLMKYLNS TEEYLAHLCG PKRSDLSLPV SVAYALIFLV GVMGNLLVCM  60
   61 VIVRHQTLKT PTNYYLFSLA VSDLLVLLLG MPLEIYEMWH NYPFLFGPVG CYFKTALFET 120
  121 VCFASILSVT TVSVERYVAI VHPFRAKLES TRRRALRILS LVWSFSVVFS LPNTSIHGIK 180
  181 FQHFPNGSSV PGSATCTVTK PMWVYNLIIQ ATSFLFYILP MTLISVLYYL MGLRLKRDES 240
  241 LEANKVAVNI HRPSRKSVTK MLFVLVLVFA ICWTPFHVDR LFFSFVEEWT ESLAAVFNLI 300
  301 HVVSGVFFYL SSAVNPIIYN LLSRRFRAAF RNVVSPTCKW CHPRHRPQGP PAQKIIFLTE 360
  361 CHLVELTEDA GPQFPGQSSI HNTNLTTAPC AGEVP

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.96
Transmembrane Helix	42	63	0.93
Cytoplasmic	64	73	0.84
Transmembrane Helix	74	95	0.93
Non-Cytoplasmic	96	114	0.89
Transmembrane Helix	115	134	0.92
Cytoplasmic	135	154	0.86
Transmembrane Helix	155	179	0.85
Non-Cytoplasmic	180	207	0.97
Transmembrane Helix	208	231	0.88
Cytoplasmic	232	257	0.95
Transmembrane Helix	258	278	0.91
Non-Cytoplasmic	279	298	0.87
Transmembrane Helix	299	321	0.91
Cytoplasmic	322	395	0.99