YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19577319
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENLFASFI IPTMMGLPIV VTIIMFPSIL FPSSERLISN RLHSFQHWLI KLIIKQMMLI  60
   61 HTPKGRTWAL MIVSLIMFIG STNLLGLLPH TFTPTTQLSM NLSMAIPLWA GAVILGFRHK 120
  121 LKNSLAHFLP QGTPISLIPM LIIIETISLF IQPMALAVRL TANITAGHLL MHLIGGATLV 180
  181 LMGISPPTAT ITFIILLLLT VLEFAVALIQ AYVFTLLVSL YLHDNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.81
Transmembrane Helix	9	31	0.91
Cytoplasmic	32	66	0.89
Transmembrane Helix	67	88	0.93
Non-Cytoplasmic	89	97	0.76
Transmembrane Helix	98	117	0.92
Cytoplasmic	118	132	0.75
Transmembrane Helix	133	156	0.81
Non-Cytoplasmic	157	163	0.76
Transmembrane Helix	164	184	0.88
Cytoplasmic	185	192	0.67
Transmembrane Helix	193	214	0.91
Non-Cytoplasmic	215	226	0.79