YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1799824
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	39	0.75
Transmembrane Helix	40	59	0.91
Cytoplasmic	60	74	0.89
Transmembrane Helix	75	97	0.93
Non-Cytoplasmic	98	105	0.88
Transmembrane Helix	106	127	0.86
Cytoplasmic	128	133	0.63
Transmembrane Helix	134	159	0.78
Non-Cytoplasmic	160	174	0.71
Transmembrane Helix	175	194	0.88
Cytoplasmic	195	209	0.89
Transmembrane Helix	210	230	0.83
Non-Cytoplasmic	231	236	0.74
Transmembrane Helix	237	258	0.95
Cytoplasmic	259	286	0.81
Transmembrane Helix	287	307	0.84
Non-Cytoplasmic	308	340	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHRSSGVFMK LFRILDPFTL TLITVVLLAS FFPARGDFVP FFENLTTAAI ALLFFMHGAK  60
   61 LSREAIIAGG GHWRLHLWVM CSTFVLFPIL GVLFAWWKPV NVDPMLYSGF LYLCILPATV 120
  121 QSAIAFTSMA GGNVAAAVCS ASASSLLGIF LSPLLVGLVM NVHGAGGSLE QVGKIMLQLL 180
  181 LPFVLGHLSR PWIGDWVSRN KKWIAKTDQT SILLVVYTAF SEAVVNGIWH KVGWGSLLFI 240
  241 VVVSCVLLAI VIVVNVFMAR RLSFNKADEI TIVFCGSKKS LANGIPMANI LFPTSVIGMM 300
  301 VLPLMIFHQI QLMVCAVLAR RYKRQTEQLQ AQQESSADKA