YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EG12853
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.92
Transmembrane Helix	31	52	0.94
Non-Cytoplasmic	53	84	0.89
Transmembrane Helix	85	104	0.91
Cytoplasmic	105	120	0.72
Transmembrane Helix	121	139	0.81
Non-Cytoplasmic	140	142	0.43
Transmembrane Helix	143	165	0.66
Cytoplasmic	166	166	0.33
Transmembrane Helix	167	194	0.74
Non-Cytoplasmic	195	213	0.65
Transmembrane Helix	214	232	0.89
Cytoplasmic	233	259	0.94
Transmembrane Helix	260	281	0.93
Non-Cytoplasmic	282	299	0.91
Transmembrane Helix	300	323	0.89
Cytoplasmic	324	342	0.94
Transmembrane Helix	343	362	0.94
Non-Cytoplasmic	363	381	0.85
Transmembrane Helix	382	402	0.90
Cytoplasmic	403	407	0.72
Transmembrane Helix	408	430	0.86
Non-Cytoplasmic	431	439	0.70
Transmembrane Helix	440	458	0.90
Cytoplasmic	459	472	0.75
Transmembrane Helix	473	495	0.89
Non-Cytoplasmic	496	508	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSSIPSSS QSGKLYGWVE RIGNKVPHPF LLFIYLIIVL MVTTAILSAF GVSAKNPTDG  60
   61 TPVVVKNLLS VEGLHWFLPN VIKNFSGFAP LGAILALVLG AGLAERVGLL PALMVKMASH 120
  121 VNARYASYMV LFIAFFSHIS SDAALVIMPP MGALIFLAVG RHPVAGLLAA IAGVGCGFTA 180
  181 NLLIVTTDVL LSGISTEAAA AFNPQMHVSV IDNWYFMASS VVVLTIVGGL ITDKIIEPRL 240
  241 GQWQGNSDEK LQTLTESQRF GLRIAGVVSL LFIAAIALMV IPQNGILRDP INHTVMPSPF 300
  301 IKGIVPLIIL FFFVVSLAYG IATRTIRRQA DLPHLMIEPM KEMAGFIVMV FPLAQFVAMF 360
  361 NWSNMGKFIA VGLTDILESS GLSGIPAFVG LALLSSFLCM FIASGSAIWS ILAPIFVPMF 420
  421 MLLGFHPAFA QILFRIADSS VLPLAPVSPF VPLFLGFLQR YKPDAKLGTY YSLVLPYPLI 480
  481 FLVVWLLMLL AWYLVGLPIG PGIYPRLS