YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1944409
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPGAYDFHH LPHVKTQTQS KKALWITLVL TVFFTVVEII GGVLSNSLAL LSDSAHMASD  60
   61 VLALGLSMVA LYMATRPPNR RFTFGFLRFE IIASFLNGLT LAVIAVWILW EGIERFLHPE 120
  121 PIQFRLMLGI AAIGLIVNLT LTIVLSRSTK EEDNLNVQSA LWHFIGDLIS SIGVIISALL 180
  181 IYFTGWTIFD PIISLVIAAI IFTGGAKIMR ESYLILMEAV PDEFDLEQIR ADIRNIEGVE 240
  241 DVHDMHLWAI STDHYSLSAH VFVNEHIQPL CVILAVNEML KEKYGIEHST IQVEHAILHD 300
  301 HGSYGKAFLE KRKASQP

Type	Start	End	Confidence
Cytoplasmic	1	22	0.99
Transmembrane Helix	23	44	0.92
Non-Cytoplasmic	45	54	0.77
Transmembrane Helix	55	75	0.92
Cytoplasmic	76	85	0.91
Transmembrane Helix	86	110	0.86
Non-Cytoplasmic	111	123	0.90
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	159	0.91
Transmembrane Helix	160	182	0.91
Non-Cytoplasmic	183	187	0.75
Transmembrane Helix	188	209	0.88
Cytoplasmic	210	317	0.99