YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170304
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLCIKNGFL AAALVLVGLL ICSIQMIGAQ SIGVCYGKHA NNLPSDQDVI NLYDANGIRK  60
   61 MRIYNPDTNV FNALRGSNIE IILDVPLQDL QSLTDPSRAN GWVQDNIINH FPDVKFKYIA 120
  121 VGNEVSPGNN GQYAPFVAPA MQNVYNALAA AGLQDQIKVS TATYSGILAN TNPPKDSIFR 180
  181 GEFNSFINPI IQFLVQHNLP LLANVYPYFG HIFNTADVPL SYALFTQQEA NPAGYQNLFD 240
  241 ALLDSMYFAV EKAGGQNVEI IVSESGWPSE GNSAATIENA QTYYENLINH VKSGAGTPKK 300
  301 PGNAIETYLF AMFDENNKEG DITEKHFGLF SPDQRAKYQL NFN

Type	Start	End	Confidence
Signal Peptide	1	29	0.98
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	343	0.99