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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4586928
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCRLPGASG VEEFWDLLTE GRDAVARQPD GSWRAALAET GTFDAGFFGM SPRQAAAADP  60
   61 QQRLVLELGW EALEHAGVVP ATLAGSRTGV FVGVTADDYA TSLWRTGTTP DGYTVPGLNR 120
  121 SMIANRLSYL LELRGPSFVV DSAQSSSLVA VHLACESLLR GESDAAIVAG VSLISTPEST 180
  181 AAMASLGALS PDGRCYTFDA RANGYVRGEG GAAVVLKRLS DALVDGDRVH AVILGGAVNN 240
  241 DGGGPGLLAP DRAAQEEVLR RAYDRSGVGP AQVTYVELHG TGTPVGDPVE AAALGAVFGA 300
  301 DRRADDPLHV GSVKSNIGHL EGAAGITGLL KAVLCVREGV LPPTLNHQTP NPGIPLAQLR 360
  361 LRVQTTVQRW PDRADEGRRI AAVSSFGMGG TNAHLVLAQA PERAVRPAVS PTTELPAVPW 420
  421 VLSARSEAAL RGQAERLREH LDRHPDLRPL DVGFSLATSR DVFPHRSVRF ADGEPVAAGS 480
  481 GRLAEGRVAW VFPGQGAQWT GMAAASLTES PVFAARLTEC AAAVTPFVDW SLLDVLRAVP 540
  541 GSPRLDRDDV VQPACFAVMV SLAELWRSWG VVPEAVVGHS QGEIAAAVVA GAISLEDGAR 600
  601 IVALRSQLLT RELHGLGGMV SVGLPVAETE RLLTRWSGRL HLAVVNGPNA TVVAGDGDAL 660
  661 DELVTECERR QARVRRVAVE YASHSPHVER IRDELMTALR PVTPQPSAVA FYSTADVGIT 720
  721 DGERLDAGYW YRNLRQPVRF ADTLRQMSTD GYTSFVELSA HPMLVTALEE ILAQETTAAL 780
  781 CVTGSLRRDE GGLGRMLASA AEGWAHGLPV DWRKVFAGTG AERVELPTYA FQRQRYWAPD 840
  841 AERTAVPPAA VDAPVRPAAS PPEQATPAQA TTQQTYDLLR TVLETVATVQ GLPSAETVDP 900
  901 DLTFKEQGLE SYAAVEFRNR LRARVGLSLP ATLVYDFPTP TAVAGFLGDQ LHPRESQLVT 960
  961 VTPALVDDEP IAIVGMGCRF PGGVSSPEDL WDVVASGVDA VSPFPVDRGW DLESLFDGDP1020
 1021 DRAGTTYCRE GGFLDDAAGF DAGFFGVSPR EAVAMDPQQR LLLEGVVEGV GAGGFSSAGV1080
 1081 RGSRTGVYAG VMNQEYGPRL YESAEEHRGY LLTGTAASVV SGRVSYVLGL EGPAVTVDTA1140
 1141 CSSSLVALHL AVQALRSGEC DVALAGGVTV MATPGIFVEF SRQGGLAVDG RCKAYSDSAD1200
 1201 GTGWSEGVGV VVVQRLSDAV AAGRRVLAVV RGSAVNQDGA SNGLTAPSGS SQQRVIRAAL1260
 1261 ASARLSVGDV DVVEGHGTGT RLDPIEAQAL LATYGRRGGG RSLLLGSVKS NIGHAQAAAG1320
 1321 VAGVVKMVLA MERGVVPASL HVRCAVFACQ DWSSGAVEVV GEACAWPETG RPRRAAVSSF1380
 1381 GVSGTNAHVI LEQAPPVVPD ASSSAGAPVS AVSDADSSSV SVPWVLSARS EWGLRASAGR1440
 1441 LEAALSGPLS GSGSGSGVVS GVDVGWSLGG RSVFGWRGVS LSGVGRLGVL AGGGVGSGVV1500
 1501 VGSGRVASGG VVFVFPGQGA QWVGMARGLL GESGVFSEAF DEVGGVVQGL VDWPVRGTAC1560
 1561 REVGRGDLGR VDVVQPLSFV VMVALARLSR SSGVVPPGWV GHSQGEIAAA VVSGALSVEE1620
 1621 GARVVVGRSR VIGARLAGGG AMVWVGASVG VVEGLLGGLG GGLEVAVVNG PGQVVVAGDG1680
 1681 GWGGGVVGAG VGGWGVRARL LPVGYGSHCG LVDVVRDELL GVLGEVRGGS SVIPFYSSVD1740
 1741 VGVVDGGVLD GGYWFRNLRL RVRFGEVVRR LVGDGFSSFV EVSAHPVLVG AIEDVLGEVG1800
 1801 GGVGFVCGGF VAVGVDGGLG RMVVSAAEGW VRGLPVQWRR VPVLAGGRQV GLPTYPFQHD1860
 1861 RYWLAPAPRT AVAAGATAAD GAAAGVGWRY RVGWKALPVP TPGRLHGRWL VVHGHATGGV1920
 1921 DQLSGVVADI LTRHGATTEH LTIDPAEPGV LAERLGALAA AGEPVRGVVS LLDLDGTLLL1980
 1981 VQAMGRAGLD ARIRAVTTGA VAVSSDEVPS SEGAALWAFG RVAALELPDR WAGLIDLPVQ2040
 2041 ADARALERLA GALTSEEENQ LAVRASGLYT RRIIRTAGRA RKEWRPRGTV LVTGGTGALG2100
 2101 ARVARWLADH GAEHLVLVSR RGAQATGAAE LVAGLERTGV RVTVAACDVA DRDGAGRPAG2160
 2161 GAPTAGGLPH RWRARRPDGG PAHSRGSGCG VPAERLAATH LHDLTAHRDL DAFVLFSSIV2220
 2221 GSWGNAGQAA YAAANAALDA LAEQRRSAGL PATSIAWGLW AGAGMADGAG EQTFTRRGVR2280
 2281 AMDPDDGIAA LRQALDSGDT CVTVADVDWP SMVRTHANPA AARLFEEIPE ARQALADRAA2340
 2341 EQSAERPSDL ARRLTGLTAA DRRRLLLDLI GAQAAVILRQ DSGWTIPPDS AFRASGFDSL2400
 2401 TALELRNRLN AATGLTLPST VVFDHPSPVA LADFLLDAVL PRSGGADGVV EVAAAPDEPI2460
 2461 AVIGVGCRYP GGVATPEQLW DLLLTERDAI GPLPTDRGWN IDDIFDPEPG RVGRTYCREG2520
 2521 GFLHDAADFD AAFFGISPRE ALAMDPQQRL ILETSWEALE RAGIDPRSLR GSRTGVYTGM2580
 2581 THQEYAARLH EMPEEYEGHL LTGTSGSVAS GRVSYVLGLE GPAVTVDTAC SSSLVAIHLA2640
 2641 VQALRAGECD LALAGGVTVM ATRDCSWSSP ASGASPRRPV QGVLRQADGT GWSEGAGVIT2700
 2701 LARLSDAVRD GRHILALIRG PRSTRTVPAT GSPRRTGRHS SASSRLALAN AGLTPPEVDA2760
 2761 VEAHGTGTRL GDPIEAGALL ATYGQGRPVD QPVRLGTLKS NIGHTQAAAG VAGMIKMVLA2820
 2821 LRHGVLPATL HATEPSPHID WNAGAVSLLT ERTDWPDNPR PRRAAVSAFG ISGTNAHIIL2880
 2881 EQAPEPTVPS ERSERAAGPR LSVVPWPLSG RSEPALRAQA ARLRDFLDDG ADPVDVGFSL2940
 2941 ATTRSRLDHR AVVLLDGETA PTEALHALVS GDAGRAVLSG TPRDTALAFL FTGQGSQRLG3000
 3001 MADGIRREFP PFAEALAEIA AEMDTRLDQP LLSVMFAEPG SATATLIDRT EYAQPALFAV3060
 3061 EVALFRLFES WGVRPDVLLG HSVGEIAAAH VAGVMDLEHA CRLVAARGRL MQRMPADGAM3120
 3121 IAIRLPEERV REQLHDLGRH VSVAAVNGPE SVVVSGAGHV VRSLADQLTA EGHRVRRLNV3180
 3181 SHAFHSPHVD EVLEEFRKAA AEVRYGRPLV PVVSNVTGRV ATEDELGSAE YWVRHLREPV3240
 3241 RFHDGIRTLL DRGATTLVEL GPDGVLCGLA AQCLDPDRDE VALVPALHRT SGEVRSLVAA3300
 3301 AATVHVRGHD VDWNGFFAET GARRVDLPTY AFQRQRYWAS VSPPGSDQTA AVRFGLNAAD3360
 3361 HPLLGGALSV AGSEDLIFTG RLSLAAQPWI AGHRVGERAA ARYAFLEVAS RAGRAVGGDR3420
 3421 VRDLQIEAPL VVPDRGAVQV QVVLTGGDEP DGRQVRVFAR PEGSTAPWTR HATGNGDAAG3480
 3481 GSGRRPGVGA LVAPEGAVPL DVGDLYRRFA AQHLEYDGVF TGVRELWRRA DEVFAEVRLP3540
 3541 DGAEVEAAAF GVHPALLDAA LQPWLAGDFV SRPADSVHLP FAWQGMQVHT SGAAALRVRI3600
 3601 RRAGESAVSM QAVAVDGAPV CSLDALVLRP TTVRSLRRTV GPALLPLHHL RWREREPGQA3660
 3661 PGTPLTFLGP TGAERYVGEA VTVHQDLTAL RAVGQRGAPP PRAVLAAFGS PHRTAEAVRA3720
 3721 VAAAALDLVQ RWLADDRHQD SRLVLVTERA VAADDHEDVP DLAGAAVWGL VRSAQSEHPG3780
 3781 RFALIDHDGT EQSRALLPAA VALGCAQLAL RQGTVRVPAL AALPPTESGA DTRLAPDGTV3840
 3841 LVTGAAGALG ALVVRHLVAE HGVRRLLLLS RHGREAAGMA ELAEDLAQRG VTVTVLACDV3900
 3901 ADRTGLAAAL DAVPDEHPLT AVVHAAGVLD DAMVTGLTAD RLDEVLRPKV DAALHLHELT3960
 3961 ADRKLAAFVL FSAAAGLLGN PGQASYAAAN TVLDALAHHR RANGLPATSL AWGVLGGPNG4020
 4021 MAANLNAAHL RRLARYGIAP LDGDEARSLL DRALRTDRAL LVPLRLTRVD ARQDPADVPE4080
 4081 ILRPLVVPVV ADGGGRSPAT GPNSLEAFRA QLAELDDGTR GEHLLDLVRR QVAEVLGHDR4140
 4141 ADVVDPKRPF QDLGFDSLLA VELRNRLQAA TGLPLPATLG FDHPTPQTVV DHLAESLLSR4200
 4201 PEGDPGEQAL TGLDAVARAL TKLGDEDIRR VVVRRRLAEL LATVAGAEPD LANGGGTGAG4260
 4261 VDDGHDDTAL VERLSGASDE DLLAFIDEQI 

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