YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3184197
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTIPAPFT AIHTIFDLAF TTSLDTMIGT IQEAVSAPLI ACVTLWIIVQ GILVIRGEVD  60
   61 VRGGITRVIT VTVVIALIVG QANYHDYVVS VFEETIPNFV QKFSGSGLPL QTIPTQLDTM 120
  121 FALTQAAFQK IASEIGPMND QDILAFQGAQ WVFYGTLWSA FGIYDAVGIL TKVLLAIGPL 180
  181 ILVGYIFDRT RDIAAKWIGQ LVTYGLLLLL LNLVATIVIL TEATALTLML GVITLAGTTA 240
  241 AKIIGLYELD MFFLTGDALI VALPAIAGNI GGSYWSGATQ SANSVYRRFA HVERR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.59
Transmembrane Helix	9	28	0.61
Non-Cytoplasmic	29	33	0.76
Transmembrane Helix	34	55	0.90
Cytoplasmic	56	62	0.91
Transmembrane Helix	63	82	0.91
Non-Cytoplasmic	83	160	0.90
Transmembrane Helix	161	187	0.83
Cytoplasmic	188	196	0.87
Transmembrane Helix	197	219	0.87
Non-Cytoplasmic	220	224	0.63
Transmembrane Helix	225	246	0.77
Cytoplasmic	247	252	0.66
Transmembrane Helix	253	275	0.84
Non-Cytoplasmic	276	295	0.69