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View Structure Prediction Details

Protein: TYB_DANRE
Organism: Danio rerio
Length: 45 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYB_DANRE.

Description E-value Query
Range
Subject
Range
gi|73978894 - gi|73978894|ref|XP_852787.1| PREDICTED: similar to thymosin, beta 4 [Canis familiaris]
95.0 [0..1] [44..1]
gi|33086682 - gi|33086682|gb|AAP92653.1| Da1-6 [Rattus norvegicus]
86.0 [0..1] [40..87]
gi|109131621 - gi|109131621|ref|XP_001082206.1| PREDICTED: similar to thymosin-like 8 [Macaca mulatta]
80.0 [0..1] [41..253]
gi|47222942 - gi|47222942|emb|CAF99098.1| unnamed protein product [Tetraodon nigroviridis]
79.0 [0..1] [42..284]
gi|112180797, gi... - gi|112180797|gb|AAH16732.2| TMSB4X protein [Homo sapiens], gi|112180784|gb|AAH22857.2| TMSB4X protei...
71.0 [0..1] [44..27]

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Predicted Domain #1
Region A:
Residues: [1-45]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKPNMTEI TSFDKTKLRK TETQEKNPLP TKETIEQERQ GESTP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.326 a.2.19 Description not found.
View Download 0.266 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.258 a.108.1 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
View Download 0.206 a.108.1 Ribosomal protein L7/12, oligomerisation (N-terminal) domain


YRC Informatics Platform - Version 3.0
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