YRC Public Data Repository - Protein Structure Prediction

Protein:	4EB3L_DANRE
Organism:	Danio rerio
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 4EB3L_DANRE.

Description	E-value	Query Range	Subject Range
gi\|47086433, gi\|... - gi\|47086433\|ref\|NP_997968.1\| eukaryotic translation initiation factor 4E binding protein 2 [Danio re...	170.0	[0..1]	[112..1]
gi\|39794331, gi\|... - gi\|45361513\|ref\|NP_989333.1\| eukaryotic translation initiation factor 4E binding protein 2 [Xenopus ...	169.0	[0..1]	[112..1]
gi\|148236683, gi... - gi\|49670444\|gb\|AAH75198.1\| MGC83416 protein [Xenopus laevis], gi\|148236683\|ref\|NP_001086480.1\| MGC83...	168.0	[0..1]	[112..1]
gi\|47223260 - gi\|47223260\|emb\|CAF98644.1\| unnamed protein product [Tetraodon nigroviridis]	167.0	[0..3]	[112..1]
EIF4EBP2 - eukaryotic translation initiation factor 4E binding protein 2 gi\|55634971 - gi\|55634971\|ref\|XP_508163.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi... ENSMMUT000000325... - null, null gi\|60656297, gi\|... - gi\|60656299\|gb\|AAX32713.1\| eukaryotic translation initiation factor 4E binding protein 2 [synthetic ...	166.0	[0..3]	[112..7]
gi\|71682965, gi\|... - gi\|74271859\|ref\|NP_001028241.1\| eukaryotic translation initiation factor 4E binding protein 2 [Rattu...	165.0	[0..4]	[112..8]
4EBP2_MOUSE - Eukaryotic translation initiation factor 4E-binding protein 2 OS=Mus musculus GN=Eif4ebp2 PE=1 SV=1	163.0	[0..4]	[112..8]
tr\|G1SJT0\|G1SJT0... - pep:novel chromosome:oryCun2:18:16549838:16567388:-1 gene:ENSOCUG00000003475 transcript:ENSOCUT00000... gi\|119918532 - gi\|119918532\|ref\|XP_001250585.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E-b... gi\|73953390 - gi\|73953390\|ref\|XP_546145.2\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi...	163.0	[0..3]	[112..7]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTQQSKS CPIPTRVLHL KDWSQLPDCY SQTPGGTLFS TTPGGTRIIY DRKFLLDCRN  60
   61 SPIARTPPCC LPQIPGVTIP SLHPVSKLQE LKEELEEEKE LAADDSQFEM DI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.420216
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.454	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.454	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.390	N/A	N/A	d.37.1	CBS-domain
View	Download	0.373	N/A	N/A	d.37.1	CBS-domain
View	Download	0.345	N/A	N/A	d.37.1	CBS-domain
View	Download	0.311	N/A	N/A	g.44.1	RING/U-box
View	Download	0.249	N/A	N/A	a.118.18	Cysteine rich protein B (HcpB)
View	Download	0.210	N/A	N/A	b.55.1	PH domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits