YRC Public Data Repository - Protein Structure Prediction

Protein:	MYG_DANRE
Organism:	Danio rerio
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYG_DANRE.

Description	E-value	Query Range	Subject Range
gi\|73988393 - gi\|73988393\|ref\|XP_542374.2\| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris]	164.0	[0..3]	[140..52]
gi\|183885 - gi\|183885\|gb\|AAB50159.1\| hemoglobin gamma-G [Homo sapiens]	164.0	[0..3]	[140..13]
HBG_MACMU - Hemoglobin subunit gamma OS=Macaca mulatta GN=HBG PE=1 SV=2 HBG_PAPCY - Hemoglobin subunit gamma OS=Papio cynocephalus GN=HBG PE=1 SV=2 gi\|160904155 - gi\|160904155\|gb\|ABX52141.1\| hemoglobin subunit gamma (predicted) [Papio anubis] HBG_MACFU - Hemoglobin subunit gamma OS=Macaca fuscata fuscata GN=HBG PE=1 SV=2	163.0	[0..3]	[140..8]
HBG1_PONPY - Hemoglobin subunit gamma-1 OS=Pongo pygmaeus GN=HBG1 PE=2 SV=2	163.0	[0..3]	[140..8]
HBG2_HYLLA - Hemoglobin subunit gamma-2 OS=Hylobates lar GN=HBG2 PE=2 SV=2	163.0	[0..3]	[140..8]
gi\|1587328 - gi\|1587328\|prf\|\|2206405B hemoglobin:SUBUNIT=epsilon1	163.0	[0..3]	[140..7]
HBG_MACNE - Hemoglobin subunit gamma OS=Macaca nemestrina GN=HBG PE=1 SV=1	163.0	[0..3]	[140..7]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADHDLVLKC WGAVEADYAA NGGEVLNRLF KEYPDTLKLF PKFSGISQGD LAGSPAVAAH  60
   61 GATVLKKLGE LLKAKGDHAA LLKPLANTHA NIHKVALNNF RLITEVLVKV MAEKAGLDAA 120
  121 GQGALRRVMD AVIGDIDGYY KEIGFAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2nrlA
Description:	No description for 2nrlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits