YRC Public Data Repository - Protein Structure Prediction

Protein:	FGF1_DANRE
Organism:	Danio rerio
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FGF1_DANRE.

Description	E-value	Query Range	Subject Range
gi\|60829861 - gi\|60829861\|gb\|AAX36897.1\| fibroblast growth factor 7 [synthetic construct]	169.0	[0..2]	[144..47]
FGF7_PONPY - Keratinocyte growth factor precursor - Pongo pygmaeus (Orangutan) FGF7_PONAB - Fibroblast growth factor 7 OS=Pongo abelii GN=FGF7 PE=2 SV=1 FGF7 - fibroblast growth factor 7 (keratinocyte growth factor) gi\|109081066 - gi\|109081066\|ref\|XP_001113805.1\| PREDICTED: similar to Keratinocyte growth factor precursor (KGF) (F... gi\|61356080 - gi\|61356080\|gb\|AAX41206.1\| fibroblast growth factor 7 [synthetic construct] gi\|114656948, gi... - gi\|114656950\|ref\|XP_001167319.1\| PREDICTED: fibroblast growth factor 7 isoform 3 [Pan troglodytes], ...	169.0	[0..2]	[143..47]
FGF7_CANLF - Fibroblast growth factor 7 OS=Canis lupus familiaris GN=FGF7 PE=2 SV=1	168.0	[0..2]	[143..47]
gi\|55700036, gi\|... - gi\|68405681\|ref\|XP_702354.1\| PREDICTED: hypothetical protein XP_697262 [Danio rerio], gi\|55700036\|db...	168.0	[0..1]	[147..1]
FGF7_SHEEP - Fibroblast growth factor 7 OS=Ovis aries GN=FGF7 PE=2 SV=1	168.0	[0..2]	[143..47]
FGF7_CEREL - Fibroblast growth factor 7 OS=Cervus elaphus GN=FGF7 PE=2 SV=1 gi\|119902623 - gi\|119902623\|ref\|XP_874109.2\| PREDICTED: similar to keratinocyte growth factor FGF-7 [Bos taurus]	168.0	[0..2]	[143..47]
gi\|147904758, gi... - pir\|\|JC7082 fibroblast somatotropin-20 - African clawed frog, gi\|5762262\|dbj\|BAA83474.1\| XFGF-20 [X...	163.0	[0..1]	[146..40]
gi\|114656952 - gi\|114656952\|ref\|XP_001167258.1\| PREDICTED: similar to Keratinocyte growth factor precursor (KGF) (F...	162.0	[0..11]	[143..1]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEADIAVKS SPRDYKKLTR LYCMNGGFHL QILADGTVAG AADENTYSIL RIKATSPGVV  60
   61 VIEGSETGLY LSMNEHGKLY ASSLVTDESY FLEKMEENHY NTYQSQKYGE NWYVGIKKNG 120
  121 KMKRGPRTHI GQKAIFFLPR QVEQEED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1basA
Description:	THREE-DIMENSIONAL STRUCTURES OF ACIDIC AND BASIC FIBROBLAST GROWTH FACTORS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits