YRC Public Data Repository - Protein Structure Prediction

Protein:	ALR_MOUSE
Organism:	Mus musculus
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALR_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|23271423 - gi\|23271423\|gb\|AAH23941.1\| Gfer protein [Mus musculus]	329.0	[0..1]	[198..1]
GFER - growth factor, augmenter of liver regeneration	313.0	[0..1]	[198..1]
gi\|109127227 - gi\|109127227\|ref\|XP_001082639.1\| PREDICTED: similar to erv1-like growth factor isoform 2 [Macaca mul...	304.0	[0..1]	[198..1]
gi\|73959530 - gi\|73959530\|ref\|XP_537010.2\| PREDICTED: similar to erv1-like growth factor [Canis familiaris]	289.0	[0..1]	[198..107]
gi\|39961850, gi\|... - gi\|39961850\|ref\|XP_364723.1\| hypothetical protein MG09568.4 [Magnaporthe grisea 70-15], gb\|EAA53818....	242.0	[0..46]	[196..31]
gi\|28921166, gi\|... - gi\|32421457\|ref\|XP_331172.1\| hypothetical protein [Neurospora crassa], gi\|28921166\|gb\|EAA30480.1\| au... gi\|85093549 - gi\|85093549\|ref\|XP_959716.1\| augmenter of liver regeneration [Neurospora crassa OR74A]	233.0	[0..48]	[198..29]
gi\|111068908 - gi\|111068908\|gb\|EAT90028.1\| hypothetical protein SNOG_03297 [Phaeosphaeria nodorum SN15]	215.0	[0..40]	[198..11]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPSEPAGF PRGSRFSFLP GGARSEMTDD LVTDARGRGA RHRDDTTPAA APAPQGLEHG  60
   61 KRPCRACVDF KSWMRTQQKR DIKFREDCPQ DREELGRHTW AFLHTLAAYY PDRPTPEQQQ 120
  121 DMAQFIHIFS KFYPCEECAE DIRKRIGRNQ PDTSTRVSFS QWLCRLHNEV NRKLGKPDFD 180
  181 CSRVDERWRD GWKDGSCD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.39794
Match:	1oqcA
Description:	Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.17051161098519	bayes_pls_golite062009
protein binding	1.65823225994462	bayes_pls_golite062009
catalytic activity	0.078262001290635	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, oxygen as acceptor	0.0687090602086788	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: